Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   L0P93_RS19495 Genome accession   NZ_CP109795
Coordinates   3823492..3824181 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3818492..3829181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS19460 (L0P93_19465) - 3818690..3819172 (-) 483 WP_003151394.1 flagellar protein FlgN -
  L0P93_RS19465 (L0P93_19470) flgM 3819187..3819453 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L0P93_RS19470 (L0P93_19475) - 3819523..3819942 (-) 420 WP_277161029.1 TIGR03826 family flagellar region protein -
  L0P93_RS19475 (L0P93_19480) comFC 3820016..3820705 (-) 690 WP_202627211.1 ComF family protein Machinery gene
  L0P93_RS19480 (L0P93_19485) - 3820711..3820995 (-) 285 WP_003151389.1 competence protein ComFB -
  L0P93_RS19485 (L0P93_19490) comFA 3821053..3822438 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  L0P93_RS19490 (L0P93_19495) - 3822546..3823394 (-) 849 WP_003151387.1 DegV family protein -
  L0P93_RS19495 (L0P93_19500) degU 3823492..3824181 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L0P93_RS19500 (L0P93_19505) degS 3824258..3825421 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  L0P93_RS19505 (L0P93_19510) - 3825644..3826291 (+) 648 WP_007614107.1 YigZ family protein -
  L0P93_RS19510 (L0P93_19515) - 3826296..3827510 (+) 1215 WP_277161030.1 LCP family protein -
  L0P93_RS19515 (L0P93_19520) - 3827609..3828685 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=749271 L0P93_RS19495 WP_003219701.1 3823492..3824181(-) (degU) [Bacillus velezensis strain B19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=749271 L0P93_RS19495 WP_003219701.1 3823492..3824181(-) (degU) [Bacillus velezensis strain B19]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1