Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   L0P93_RS19475 Genome accession   NZ_CP109795
Coordinates   3820016..3820705 (-) Length   229 a.a.
NCBI ID   WP_202627211.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3815016..3825705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS19440 (L0P93_19445) fliW 3815107..3815538 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  L0P93_RS19445 (L0P93_19450) - 3815568..3816137 (-) 570 WP_003151397.1 DUF6470 family protein -
  L0P93_RS19450 (L0P93_19455) flgL 3816228..3817145 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  L0P93_RS19455 (L0P93_19460) flgK 3817157..3818674 (-) 1518 WP_277161028.1 flagellar hook-associated protein FlgK -
  L0P93_RS19460 (L0P93_19465) - 3818690..3819172 (-) 483 WP_003151394.1 flagellar protein FlgN -
  L0P93_RS19465 (L0P93_19470) flgM 3819187..3819453 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  L0P93_RS19470 (L0P93_19475) - 3819523..3819942 (-) 420 WP_277161029.1 TIGR03826 family flagellar region protein -
  L0P93_RS19475 (L0P93_19480) comFC 3820016..3820705 (-) 690 WP_202627211.1 ComF family protein Machinery gene
  L0P93_RS19480 (L0P93_19485) - 3820711..3820995 (-) 285 WP_003151389.1 competence protein ComFB -
  L0P93_RS19485 (L0P93_19490) comFA 3821053..3822438 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  L0P93_RS19490 (L0P93_19495) - 3822546..3823394 (-) 849 WP_003151387.1 DegV family protein -
  L0P93_RS19495 (L0P93_19500) degU 3823492..3824181 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  L0P93_RS19500 (L0P93_19505) degS 3824258..3825421 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25309.92 Da        Isoelectric Point: 8.2927

>NTDB_id=749269 L0P93_RS19475 WP_202627211.1 3820016..3820705(-) (comFC) [Bacillus velezensis strain B19]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTFIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=749269 L0P93_RS19475 WP_202627211.1 3820016..3820705(-) (comFC) [Bacillus velezensis strain B19]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTTTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594