Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OHJ31_RS06770 Genome accession   NZ_CP109769
Coordinates   1524261..1524791 (-) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain B2-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1519261..1529791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHJ31_RS06740 (OHJ31_06715) - 1519306..1520724 (-) 1419 WP_350327424.1 PLP-dependent aminotransferase family protein -
  OHJ31_RS06745 (OHJ31_06720) - 1520816..1521253 (+) 438 WP_350327425.1 GNAT family N-acetyltransferase -
  OHJ31_RS06750 (OHJ31_06725) - 1521388..1521819 (+) 432 WP_350327426.1 carboxymuconolactone decarboxylase family protein -
  OHJ31_RS06755 (OHJ31_06730) - 1521906..1522520 (+) 615 WP_015841653.1 hypothetical protein -
  OHJ31_RS06760 (OHJ31_06735) - 1522581..1523171 (-) 591 WP_181847157.1 hypothetical protein -
  OHJ31_RS06765 (OHJ31_06740) - 1523232..1523690 (-) 459 WP_350327427.1 GNAT family N-acetyltransferase -
  OHJ31_RS06770 (OHJ31_06745) ssb 1524261..1524791 (-) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OHJ31_RS06775 (OHJ31_06750) uvrA 1525036..1527870 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  OHJ31_RS06780 (OHJ31_06755) - 1527887..1528306 (+) 420 WP_256542871.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OHJ31_RS06785 (OHJ31_06760) - 1528688..1529545 (+) 858 WP_256554333.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=749112 OHJ31_RS06770 WP_180778595.1 1524261..1524791(-) (ssb) [Pectobacterium aroidearum strain B2-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=749112 OHJ31_RS06770 WP_180778595.1 1524261..1524791(-) (ssb) [Pectobacterium aroidearum strain B2-6]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAGAACAGTGCTCCA
GCGCAAAGTAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369