Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OHU75_RS06565 Genome accession   NZ_CP109761
Coordinates   1160046..1160420 (+) Length   124 a.a.
NCBI ID   WP_231504569.1    Uniprot ID   -
Organism   Priestia megaterium strain P-NA14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1155046..1165420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU75_RS06545 (OHU75_06545) - 1155536..1156207 (-) 672 WP_098579907.1 response regulator transcription factor -
  OHU75_RS06550 (OHU75_06550) - 1156533..1157351 (+) 819 WP_028411023.1 squalene/phytoene synthase family protein -
  OHU75_RS06555 (OHU75_06555) - 1157387..1159336 (-) 1950 WP_098579906.1 FUSC family protein -
  OHU75_RS06560 (OHU75_06560) - 1159493..1159753 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  OHU75_RS06565 (OHU75_06565) nucA/comI 1160046..1160420 (+) 375 WP_231504569.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OHU75_RS06570 (OHU75_06570) comJ 1160456..1160863 (+) 408 WP_098579905.1 competence protein ComJ -
  OHU75_RS06575 (OHU75_06575) - 1160966..1161556 (-) 591 WP_028411019.1 CPBP family intramembrane glutamic endopeptidase -
  OHU75_RS06580 (OHU75_06580) helD 1161945..1164263 (-) 2319 WP_028411018.1 RNA polymerase recycling motor HelD -
  OHU75_RS06585 (OHU75_06585) - 1164508..1164633 (-) 126 WP_016765178.1 hypothetical protein -
  OHU75_RS06590 (OHU75_06590) - 1164773..1165291 (-) 519 WP_223272391.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13659.93 Da        Isoelectric Point: 4.2689

>NTDB_id=749034 OHU75_RS06565 WP_231504569.1 1160046..1160420(+) (nucA/comI) [Priestia megaterium strain P-NA14]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSAVCTIDREGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=749034 OHU75_RS06565 WP_231504569.1 1160046..1160420(+) (nucA/comI) [Priestia megaterium strain P-NA14]
ATGGGACATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCAATTGCCGCTGGGCACTCTGCCGTTTGCACAATTGATCGCGAAG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(31-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.387

95.968

0.637