Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KUIN1_RS03940 Genome accession   NZ_AP020337
Coordinates   833466..834803 (-) Length   445 a.a.
NCBI ID   WP_011266589.1    Uniprot ID   Q4ZYI2
Organism   Pseudomonas sp. KUIN-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 828466..839803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUIN1_RS03920 (KUIN1_07330) - 828595..831804 (+) 3210 WP_152091838.1 PilC/PilY family type IV pilus protein -
  KUIN1_RS03925 (KUIN1_07340) - 831816..832223 (+) 408 WP_057456888.1 type IV pilin protein -
  KUIN1_RS03930 (KUIN1_07350) thiO 832249..833352 (+) 1104 WP_152091839.1 glycine oxidase ThiO -
  KUIN1_RS03940 (KUIN1_07360) pilR 833466..834803 (-) 1338 WP_011266589.1 sigma-54 dependent transcriptional regulator Regulator
  KUIN1_RS03945 (KUIN1_07370) pilS 834806..836398 (-) 1593 WP_003403505.1 ATP-binding protein Regulator
  KUIN1_RS03950 (KUIN1_07380) - 836388..836627 (-) 240 WP_011266590.1 PP0621 family protein -
  KUIN1_RS03955 (KUIN1_07390) - 836747..837769 (-) 1023 WP_152091840.1 outer membrane protein assembly factor BamD -
  KUIN1_RS03960 (KUIN1_07400) rluD 837919..838881 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KUIN1_RS03965 (KUIN1_07410) pgeF 838878..839606 (+) 729 WP_152091841.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49737.68 Da        Isoelectric Point: 6.3796

>NTDB_id=74898 KUIN1_RS03940 WP_011266589.1 833466..834803(-) (pilR) [Pseudomonas sp. KUIN-1]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=74898 KUIN1_RS03940 WP_011266589.1 833466..834803(-) (pilR) [Pseudomonas sp. KUIN-1]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTTAGCG
GTGCCCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCGCACACCGGGACGCTGTTTCTCGATGAAGTCGCAGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAGCCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCTGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
ACTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4ZYI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment