Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N8A73_RS16260 Genome accession   NZ_CP109651
Coordinates   3147000..3147689 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain LG01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3142000..3152689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS16225 - 3142079..3142561 (-) 483 WP_024423619.1 flagellar protein FlgN -
  N8A73_RS16230 flgM 3142580..3142843 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  N8A73_RS16235 - 3142923..3143342 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  N8A73_RS16240 comFC 3143399..3144055 (-) 657 WP_227001684.1 ComF family protein Machinery gene
  N8A73_RS16245 - 3144082..3144375 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  N8A73_RS16250 comFA 3144424..3145821 (-) 1398 WP_254001458.1 DEAD/DEAH box helicase Machinery gene
  N8A73_RS16255 - 3145942..3146784 (-) 843 WP_024423625.1 DegV family protein -
  N8A73_RS16260 degU 3147000..3147689 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N8A73_RS16265 degS 3147754..3148929 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  N8A73_RS16270 - 3149150..3149818 (+) 669 WP_012011434.1 YigZ family protein -
  N8A73_RS16275 - 3149803..3150894 (+) 1092 WP_034281103.1 LCP family protein -
  N8A73_RS16280 - 3150930..3151997 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=748766 N8A73_RS16260 WP_008348273.1 3147000..3147689(-) (degU) [Bacillus safensis strain LG01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=748766 N8A73_RS16260 WP_008348273.1 3147000..3147689(-) (degU) [Bacillus safensis strain LG01]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996