Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   N8A73_RS16250 Genome accession   NZ_CP109651
Coordinates   3144424..3145821 (-) Length   465 a.a.
NCBI ID   WP_254001458.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3139424..3150821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS16215 flgL 3139625..3140533 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  N8A73_RS16220 flgK 3140543..3142063 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  N8A73_RS16225 - 3142079..3142561 (-) 483 WP_024423619.1 flagellar protein FlgN -
  N8A73_RS16230 flgM 3142580..3142843 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  N8A73_RS16235 - 3142923..3143342 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  N8A73_RS16240 comFC 3143399..3144055 (-) 657 WP_227001684.1 ComF family protein Machinery gene
  N8A73_RS16245 - 3144082..3144375 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  N8A73_RS16250 comFA 3144424..3145821 (-) 1398 WP_254001458.1 DEAD/DEAH box helicase Machinery gene
  N8A73_RS16255 - 3145942..3146784 (-) 843 WP_024423625.1 DegV family protein -
  N8A73_RS16260 degU 3147000..3147689 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N8A73_RS16265 degS 3147754..3148929 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  N8A73_RS16270 - 3149150..3149818 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52913.78 Da        Isoelectric Point: 9.8335

>NTDB_id=748765 N8A73_RS16250 WP_254001458.1 3144424..3145821(-) (comFA) [Bacillus safensis strain LG01]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=748765 N8A73_RS16250 WP_254001458.1 3144424..3145821(-) (comFA) [Bacillus safensis strain LG01]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAACTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512