Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OE059_RS14920 Genome accession   NZ_CP109617
Coordinates   2866224..2866733 (-) Length   169 a.a.
NCBI ID   WP_015880231.1    Uniprot ID   -
Organism   Exiguobacterium profundum strain TSS-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2861224..2871733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE059_RS14900 (OE059_14925) dnaB 2861996..2863348 (-) 1353 WP_015880235.1 replicative DNA helicase -
  OE059_RS14905 (OE059_14930) rplI 2863366..2863809 (-) 444 WP_159563195.1 50S ribosomal protein L9 -
  OE059_RS14910 (OE059_14935) - 2863806..2865797 (-) 1992 WP_275060201.1 DHH family phosphoesterase -
  OE059_RS14915 (OE059_14940) rpsR 2865950..2866180 (-) 231 WP_015880232.1 30S ribosomal protein S18 -
  OE059_RS14920 (OE059_14945) ssbA 2866224..2866733 (-) 510 WP_015880231.1 single-stranded DNA-binding protein Machinery gene
  OE059_RS14925 (OE059_14950) rpsF 2866771..2867058 (-) 288 WP_015880230.1 30S ribosomal protein S6 -
  OE059_RS14930 (OE059_14955) ychF 2867189..2868289 (-) 1101 WP_031424089.1 redox-regulated ATPase YchF -
  OE059_RS14935 (OE059_14960) - 2868443..2868646 (-) 204 WP_047795718.1 DUF951 domain-containing protein -
  OE059_RS14940 (OE059_14965) - 2868636..2869577 (-) 942 WP_074035244.1 mechanosensitive ion channel family protein -
  OE059_RS14945 (OE059_14970) yyaC 2869747..2870373 (+) 627 WP_078145959.1 spore protease YyaC -
  OE059_RS14950 (OE059_14975) - 2870346..2871128 (-) 783 WP_031424085.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18119.93 Da        Isoelectric Point: 5.0077

>NTDB_id=748619 OE059_RS14920 WP_015880231.1 2866224..2866733(-) (ssbA) [Exiguobacterium profundum strain TSS-3]
MINRVVLVGRLTRDPEMRYTQSGIAVTRLTLACDRPFAGQDGKRETDFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASGQREQAPSGDVFGGGESSGSGWGAGAASTSSQSSNSNKGFDADPFSGGGKI
DLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=748619 OE059_RS14920 WP_015880231.1 2866224..2866733(-) (ssbA) [Exiguobacterium profundum strain TSS-3]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACTCGCGATCCCGAAATGCGTTATACGCAGAGCGGAATCGCCGTAAC
ACGCCTTACTCTCGCTTGCGATCGTCCATTCGCTGGACAAGATGGGAAGCGCGAGACGGACTTTATTGATTGTGTCGTTT
GGCGCAAACAAGCAGAGAACGTAGCACAATACTTGAAAAAGGGCAGCATGGCCGGCGTTGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGACAAGATGGCCAACGTCGTTACCGGGCAGAAGTAGTCGCAGACAGCGTACGCTTCCTTGAACCACGCGG
AGCCTCAGGGCAACGTGAGCAAGCACCATCTGGAGATGTCTTCGGTGGTGGTGAATCAAGTGGATCAGGATGGGGCGCAG
GAGCCGCTTCGACTTCATCTCAGTCCTCGAATTCGAATAAAGGTTTTGACGCAGATCCGTTCTCGGGTGGCGGCAAAATC
GACTTGTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.977

100

0.544
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.497
  ssb Glaesserella parasuis strain SC1401

32.447

100

0.361