Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | OE059_RS04695 | Genome accession | NZ_CP109617 |
| Coordinates | 888165..888605 (+) | Length | 146 a.a. |
| NCBI ID | WP_275060467.1 | Uniprot ID | - |
| Organism | Exiguobacterium profundum strain TSS-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 878006..915281 | 888165..888605 | within | 0 |
Gene organization within MGE regions
Location: 878006..915281
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OE059_RS04615 (OE059_04615) | sufB | 878006..879403 (+) | 1398 | WP_047795116.1 | Fe-S cluster assembly protein SufB | - |
| OE059_RS04620 (OE059_04620) | - | 879529..880416 (+) | 888 | WP_275060455.1 | hypothetical protein | - |
| OE059_RS04625 (OE059_04625) | - | 880452..881660 (-) | 1209 | WP_275060456.1 | tyrosine-type recombinase/integrase | - |
| OE059_RS04630 (OE059_04630) | - | 881875..882222 (+) | 348 | WP_214687155.1 | helix-turn-helix domain-containing protein | - |
| OE059_RS04635 (OE059_04635) | - | 882245..882772 (+) | 528 | WP_214687153.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OE059_RS04640 (OE059_04640) | - | 882953..883111 (+) | 159 | WP_214687151.1 | hypothetical protein | - |
| OE059_RS04645 (OE059_04645) | - | 883210..883668 (-) | 459 | WP_275060457.1 | SHOCT domain-containing protein | - |
| OE059_RS04650 (OE059_04650) | - | 884240..884644 (-) | 405 | WP_275060458.1 | helix-turn-helix domain-containing protein | - |
| OE059_RS04655 (OE059_04655) | - | 884805..885011 (+) | 207 | WP_275060459.1 | helix-turn-helix domain-containing protein | - |
| OE059_RS04660 (OE059_04660) | - | 885102..885854 (+) | 753 | WP_275060460.1 | Rha family transcriptional regulator | - |
| OE059_RS04665 (OE059_04665) | - | 886029..886427 (+) | 399 | WP_275060461.1 | hypothetical protein | - |
| OE059_RS04670 (OE059_04670) | - | 886449..886727 (+) | 279 | WP_275060462.1 | group-specific protein | - |
| OE059_RS04675 (OE059_04675) | - | 886823..887023 (+) | 201 | WP_275060463.1 | hypothetical protein | - |
| OE059_RS04680 (OE059_04680) | - | 887023..887577 (+) | 555 | WP_275060464.1 | hypothetical protein | - |
| OE059_RS04685 (OE059_04685) | - | 887574..887819 (+) | 246 | WP_275060465.1 | hypothetical protein | - |
| OE059_RS04690 (OE059_04690) | - | 887794..888168 (+) | 375 | WP_275060466.1 | hypothetical protein | - |
| OE059_RS04695 (OE059_04695) | ssbA | 888165..888605 (+) | 441 | WP_275060467.1 | single-stranded DNA-binding protein | Machinery gene |
| OE059_RS04700 (OE059_04700) | - | 888639..889715 (+) | 1077 | WP_275060468.1 | DnaD domain protein | - |
| OE059_RS04705 (OE059_04705) | - | 889712..889861 (+) | 150 | WP_214687130.1 | hypothetical protein | - |
| OE059_RS04710 (OE059_04710) | - | 889858..890187 (+) | 330 | WP_275060469.1 | hypothetical protein | - |
| OE059_RS04715 (OE059_04715) | - | 890315..890572 (+) | 258 | WP_214687126.1 | hypothetical protein | - |
| OE059_RS04720 (OE059_04720) | - | 890728..891186 (+) | 459 | WP_275060470.1 | hypothetical protein | - |
| OE059_RS04725 (OE059_04725) | - | 891183..891725 (+) | 543 | WP_275060471.1 | Holliday junction resolvase RecU | - |
| OE059_RS04730 (OE059_04730) | - | 891729..892127 (+) | 399 | WP_275060472.1 | replication terminator protein | - |
| OE059_RS04735 (OE059_04735) | - | 892220..892957 (+) | 738 | WP_275060473.1 | hypothetical protein | - |
| OE059_RS04740 (OE059_04740) | - | 893252..894166 (+) | 915 | WP_275060474.1 | DUF6731 family protein | - |
| OE059_RS04745 (OE059_04745) | - | 894197..894631 (+) | 435 | WP_275060475.1 | hypothetical protein | - |
| OE059_RS04750 (OE059_04750) | - | 894992..895327 (+) | 336 | WP_275060476.1 | HNH endonuclease | - |
| OE059_RS04755 (OE059_04755) | - | 895317..895445 (+) | 129 | WP_275060477.1 | hypothetical protein | - |
| OE059_RS04760 (OE059_04760) | - | 895599..895970 (+) | 372 | WP_214687719.1 | hypothetical protein | - |
| OE059_RS04765 (OE059_04765) | - | 895977..897629 (+) | 1653 | WP_275060478.1 | terminase large subunit | - |
| OE059_RS04770 (OE059_04770) | - | 897648..898913 (+) | 1266 | WP_275060479.1 | phage portal protein | - |
| OE059_RS04775 (OE059_04775) | - | 898873..899481 (+) | 609 | WP_214687110.1 | HK97 family phage prohead protease | - |
| OE059_RS04780 (OE059_04780) | - | 899512..900693 (+) | 1182 | WP_214687109.1 | phage major capsid protein | - |
| OE059_RS04785 (OE059_04785) | - | 900719..901009 (+) | 291 | WP_275060480.1 | hypothetical protein | - |
| OE059_RS04790 (OE059_04790) | - | 901009..901290 (+) | 282 | WP_275060481.1 | head-tail connector protein | - |
| OE059_RS04795 (OE059_04795) | - | 901274..901588 (+) | 315 | WP_275060482.1 | hypothetical protein | - |
| OE059_RS04800 (OE059_04800) | - | 901578..901979 (+) | 402 | WP_214687104.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| OE059_RS04805 (OE059_04805) | - | 901976..902299 (+) | 324 | WP_214687103.1 | hypothetical protein | - |
| OE059_RS04810 (OE059_04810) | - | 902315..902878 (+) | 564 | WP_275060483.1 | major tail protein | - |
| OE059_RS04815 (OE059_04815) | - | 902995..903339 (+) | 345 | WP_275060484.1 | hypothetical protein | - |
| OE059_RS04820 (OE059_04820) | - | 903408..903554 (+) | 147 | WP_214687097.1 | hypothetical protein | - |
| OE059_RS04825 (OE059_04825) | - | 903567..907820 (+) | 4254 | WP_275060485.1 | phage tail tape measure protein | - |
| OE059_RS04830 (OE059_04830) | - | 907833..908681 (+) | 849 | WP_275060625.1 | phage tail domain-containing protein | - |
| OE059_RS04835 (OE059_04835) | - | 908694..909674 (+) | 981 | WP_275060486.1 | hypothetical protein | - |
| OE059_RS04840 (OE059_04840) | - | 909677..910462 (+) | 786 | WP_275060487.1 | hypothetical protein | - |
| OE059_RS04845 (OE059_04845) | - | 910477..910785 (+) | 309 | WP_275060488.1 | hypothetical protein | - |
| OE059_RS04850 (OE059_04850) | - | 910788..911024 (+) | 237 | WP_275060489.1 | hypothetical protein | - |
| OE059_RS04855 (OE059_04855) | - | 911131..912312 (+) | 1182 | WP_275060490.1 | siphovirus ReqiPepy6 Gp37-like family protein | - |
| OE059_RS04860 (OE059_04860) | - | 912394..912924 (+) | 531 | WP_275060491.1 | phage holin family protein | - |
| OE059_RS04865 (OE059_04865) | - | 912921..913553 (+) | 633 | WP_275060492.1 | M23 family metallopeptidase | - |
| OE059_RS04870 (OE059_04870) | - | 913939..914118 (-) | 180 | WP_214687082.1 | hypothetical protein | - |
| OE059_RS04875 (OE059_04875) | - | 914521..914862 (+) | 342 | WP_214757531.1 | hypothetical protein | - |
| OE059_RS04880 (OE059_04880) | - | 914859..915281 (+) | 423 | WP_251025524.1 | DUF6678 family protein | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16124.92 Da Isoelectric Point: 4.9895
>NTDB_id=748602 OE059_RS04695 WP_275060467.1 888165..888605(+) (ssbA) [Exiguobacterium profundum strain TSS-3]
MINRIVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFSGQDGKREADFIDCVVWRKQAENVSKYLSKGSMAGVDGRLQIS
SYEGQDGQKRYRAEVVADGVRFLSSKGDGRDSAPPPRDDEAPQAKGGFDQQPYSGGIDLSDDDLPF
MINRIVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFSGQDGKREADFIDCVVWRKQAENVSKYLSKGSMAGVDGRLQIS
SYEGQDGQKRYRAEVVADGVRFLSSKGDGRDSAPPPRDDEAPQAKGGFDQQPYSGGIDLSDDDLPF
Nucleotide
Download Length: 441 bp
>NTDB_id=748602 OE059_RS04695 WP_275060467.1 888165..888605(+) (ssbA) [Exiguobacterium profundum strain TSS-3]
ATGATCAACCGAATCGTATTAGTGGGAAGGCTGACACGAGACCCTGAGATGCGCTACACCCAGTCGGGCATCGCCGTGAC
ACGCTTCACGCTCGCCTGTGACCGCCCTTTCAGCGGACAGGACGGGAAACGGGAGGCGGACTTCATCGATTGCGTCGTCT
GGCGCAAGCAGGCGGAGAACGTATCGAAGTATCTATCGAAAGGGAGCATGGCCGGCGTCGACGGTCGTCTCCAAATCAGC
AGTTACGAAGGACAGGACGGACAGAAACGATATCGCGCCGAGGTCGTCGCGGACGGTGTGCGCTTCCTCAGCTCCAAAGG
TGATGGGCGCGACAGTGCACCGCCACCGAGGGACGATGAAGCGCCACAGGCAAAAGGTGGATTCGACCAACAACCTTACT
CGGGTGGCATCGATTTGTCAGATGATGATTTGCCATTCTAA
ATGATCAACCGAATCGTATTAGTGGGAAGGCTGACACGAGACCCTGAGATGCGCTACACCCAGTCGGGCATCGCCGTGAC
ACGCTTCACGCTCGCCTGTGACCGCCCTTTCAGCGGACAGGACGGGAAACGGGAGGCGGACTTCATCGATTGCGTCGTCT
GGCGCAAGCAGGCGGAGAACGTATCGAAGTATCTATCGAAAGGGAGCATGGCCGGCGTCGACGGTCGTCTCCAAATCAGC
AGTTACGAAGGACAGGACGGACAGAAACGATATCGCGCCGAGGTCGTCGCGGACGGTGTGCGCTTCCTCAGCTCCAAAGG
TGATGGGCGCGACAGTGCACCGCCACCGAGGGACGATGAAGCGCCACAGGCAAAAGGTGGATTCGACCAACAACCTTACT
CGGGTGGCATCGATTTGTCAGATGATGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.349 |
100 |
0.534 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.614 |
100 |
0.534 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
47.107 |
82.877 |
0.39 |