Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OGV19_RS16535 Genome accession   NZ_CP109603
Coordinates   3711252..3713468 (-) Length   738 a.a.
NCBI ID   WP_264309734.1    Uniprot ID   -
Organism   Pseudomonas putida strain SEH01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3706252..3718468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV19_RS16500 murB 3706492..3707511 (-) 1020 WP_264309728.1 UDP-N-acetylmuramate dehydrogenase -
  OGV19_RS16505 - 3707508..3707972 (-) 465 WP_264309729.1 low molecular weight protein-tyrosine-phosphatase -
  OGV19_RS16510 kdsB 3707972..3708736 (-) 765 WP_264309730.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OGV19_RS16515 - 3708733..3708918 (-) 186 WP_003247142.1 Trm112 family protein -
  OGV19_RS16520 lpxK 3708962..3709972 (-) 1011 WP_264309731.1 tetraacyldisaccharide 4'-kinase -
  OGV19_RS16525 - 3709972..3710406 (-) 435 WP_264309732.1 ExbD/TolR family protein -
  OGV19_RS16530 exbB 3710403..3711038 (-) 636 WP_264309733.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OGV19_RS16535 comA 3711252..3713468 (-) 2217 WP_264309734.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OGV19_RS16540 - 3713611..3714108 (+) 498 Protein_3271 DUF2062 domain-containing protein -
  OGV19_RS16545 - 3714121..3714900 (-) 780 WP_264309735.1 ABC transporter permease -
  OGV19_RS16550 - 3714897..3715829 (-) 933 WP_264309736.1 ABC transporter ATP-binding protein -
  OGV19_RS16555 - 3715964..3716587 (-) 624 WP_264309737.1 glutathione S-transferase -
  OGV19_RS16560 - 3716760..3718268 (+) 1509 WP_264309738.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79227.91 Da        Isoelectric Point: 10.1599

>NTDB_id=748389 OGV19_RS16535 WP_264309734.1 3711252..3713468(-) (comA) [Pseudomonas putida strain SEH01]
MRTGMFALALGLLCLGFLPMLPSVGWLLLLSLGAVVSLFTRLWPLGCFLLGMCWACWSAQQALDDRLAPGLDGRTLWLEG
RVAGLPGRTAQGVRFELEQASSRRAELPRRLQLSWFDGPQVRAGEHWRLAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQVLTAVGGGWRDQLRQRLLAVEAHGRQAALVALVLGDGGGLARADWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMTAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLFEPL
AALLPGFWLSFAAVATLIYCFSASLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPVAGVGEALLWLAGGLLEVLFRVLALAASWRPAWVPPALPLWAWLVVCLGALLVLLPRGVPLRGLGGAMLLALW
VPRESVPSGQVEIWQLDVGQGLAVLLRTRHHSLLYDAGPAKGEYDAGERVVLPTLQKLGVSRLDTLLISHAHADHAGGAP
AIVRGMPVARVLGGEALEGIGLQPCVSGEHWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDLEAAAERAWL
ASTEAPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHAQVVERYRRHGLAIHDTAVEGALRLVLGTQG
EVEGIKGRRRFWREAGDG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=748389 OGV19_RS16535 WP_264309734.1 3711252..3713468(-) (comA) [Pseudomonas putida strain SEH01]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCGATGCTGCCATCGGTCGGATGGCT
TCTTCTGCTGTCGCTGGGAGCTGTCGTCAGCCTGTTCACACGGCTCTGGCCGTTGGGCTGCTTTCTTTTGGGGATGTGCT
GGGCTTGCTGGTCGGCCCAGCAAGCGCTGGATGACCGACTTGCGCCTGGGCTCGATGGCCGCACGTTGTGGCTGGAGGGC
AGGGTGGCTGGCCTGCCGGGCCGCACCGCGCAAGGTGTGCGTTTCGAGCTGGAACAGGCCTCTTCACGGCGTGCCGAATT
GCCACGGCGCTTGCAACTGAGCTGGTTCGACGGGCCGCAGGTGAGGGCGGGCGAGCATTGGCGGTTGGCGGTGACCTTGC
AGCGTCCTGCCGGGCTGCTTAACCCGCATGGGCCTGATCGGGAGGCGCAGTTGCTGGCCCGGCGGATTGGCGCCACCGGC
ACGGTGAAAGCAGGGCAGGTGTTGACCGCTGTAGGTGGGGGCTGGCGTGACCAACTGCGCCAACGCCTGTTGGCGGTGGA
GGCCCATGGCCGGCAGGCGGCGCTGGTGGCCTTGGTGCTGGGGGATGGCGGGGGCCTGGCACGTGCCGATTGGCAGACAC
TGCAGGCCACCGGTACGGTGCACCTGCTGGTGATCTCCGGCCAGCATATCGGCCTGGTTGCGGGCTTGCTGTATGGCCTG
GTCGCCGGGCTGGCACGTTGGGGGCTCTGGCCCGCACGGTTGCCCTGGTTGCCCTCGGCCTGCGCCCTAGCAATGACGGC
TGCGCTCGCCTACGGCTGGCTCGCCGGTGGCGGTGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTGT
GGCGCCTGCGTTTTCGTCATCTTGGCGCGACGCTGCCATTGCTGCTGGCGCTGGTCGCGGTGCTCTTATTTGAACCCTTG
GCGGCGCTGTTGCCGGGATTCTGGCTGTCTTTCGCCGCCGTGGCGACCTTGATCTACTGCTTCAGTGCCAGCCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAGTGGGTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCCACTGGCT
TGCCGGTGAGTTTGAGTGCACCGTTGGCCAACCTGCTGGCCGTGCCGTGGGTCAGCCTTGCGGTGTTGCCGTTGGCCCTG
CTGGGCACCCTACTGTTGCCCGTGGCGGGTGTAGGTGAGGCGTTGCTGTGGCTGGCCGGGGGCTTGCTGGAGGTGCTGTT
CAGGGTCTTGGCCTTGGCCGCGAGCTGGCGCCCGGCGTGGGTGCCGCCGGCCTTGCCGCTGTGGGCCTGGTTAGTGGTGT
GCCTGGGTGCGCTGCTGGTGTTGCTGCCCCGTGGCGTGCCCTTGCGCGGGCTGGGCGGGGCCATGCTGCTGGCGTTGTGG
GTGCCCAGAGAGTCGGTGCCGTCGGGGCAGGTGGAAATCTGGCAGTTGGACGTCGGCCAGGGGCTGGCAGTGTTGTTGCG
TACCCGTCATCACAGCTTGCTTTACGACGCCGGGCCGGCCAAAGGTGAATACGACGCGGGGGAGCGGGTAGTGTTGCCGA
CCTTGCAAAAGTTGGGCGTAAGCCGCCTGGATACGCTGTTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCGCCG
GCCATTGTGCGGGGCATGCCGGTCGCGCGGGTGCTCGGTGGCGAAGCGCTGGAGGGCATTGGGCTGCAGCCTTGTGTCAG
TGGTGAGCATTGGGAGTGGGATGGTGTGCGCTTTTCGCTCTGGCATTGGGCGCAAGGGCAAAGCAGCAATGATCGCTCTT
GCGTGTTGCTGGTCGAGGCGCAAGGGGAGCGATTGCTGTTGGCGGGTGATCTGGAAGCCGCTGCCGAACGGGCCTGGCTG
GCGTCCACTGAAGCGCCTCGCATCGACTGGCTGCAGTCCCCGCACCATGGCAGCCGCAGTTCGTCCACAGAGGCGTTCAT
CCGCGCTACGGCGCCCCGTGGGGTACTGATTTCGCGGGGGCGCAACAATGGTTTTGGCCATCCGCATGCACAGGTGGTGG
AGCGTTATCGGCGGCACGGGCTGGCGATTCACGATACGGCAGTGGAGGGGGCCTTGCGGCTGGTGCTGGGCACTCAGGGT
GAAGTGGAGGGTATAAAAGGGCGGCGGCGTTTCTGGCGTGAGGCTGGCGATGGTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.11

97.425

0.576
  comA Ralstonia pseudosolanacearum GMI1000

36.051

100

0.383