Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OGV19_RS16530 Genome accession   NZ_CP109603
Coordinates   3710403..3711038 (-) Length   211 a.a.
NCBI ID   WP_264309733.1    Uniprot ID   -
Organism   Pseudomonas putida strain SEH01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3705403..3716038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV19_RS16500 murB 3706492..3707511 (-) 1020 WP_264309728.1 UDP-N-acetylmuramate dehydrogenase -
  OGV19_RS16505 - 3707508..3707972 (-) 465 WP_264309729.1 low molecular weight protein-tyrosine-phosphatase -
  OGV19_RS16510 kdsB 3707972..3708736 (-) 765 WP_264309730.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OGV19_RS16515 - 3708733..3708918 (-) 186 WP_003247142.1 Trm112 family protein -
  OGV19_RS16520 lpxK 3708962..3709972 (-) 1011 WP_264309731.1 tetraacyldisaccharide 4'-kinase -
  OGV19_RS16525 - 3709972..3710406 (-) 435 WP_264309732.1 ExbD/TolR family protein -
  OGV19_RS16530 exbB 3710403..3711038 (-) 636 WP_264309733.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OGV19_RS16535 comA 3711252..3713468 (-) 2217 WP_264309734.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OGV19_RS16540 - 3713611..3714108 (+) 498 Protein_3271 DUF2062 domain-containing protein -
  OGV19_RS16545 - 3714121..3714900 (-) 780 WP_264309735.1 ABC transporter permease -
  OGV19_RS16550 - 3714897..3715829 (-) 933 WP_264309736.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22857.20 Da        Isoelectric Point: 7.3616

>NTDB_id=748388 OGV19_RS16530 WP_264309733.1 3710403..3711038(-) (exbB) [Pseudomonas putida strain SEH01]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=748388 OGV19_RS16530 WP_264309733.1 3710403..3711038(-) (exbB) [Pseudomonas putida strain SEH01]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAAGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCGGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CGGCACCCTCGGCACCATTGCCGCGATGGCACCGCTGCTGGGGCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGGTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGGGGTATCTCCAAGGCCCTGGTTACCACTGCG
GCGGGTTTGATGATCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTGATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82