Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAO33_RS11480 Genome accession   NZ_CP123123
Coordinates   2378868..2379470 (-) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373868..2384470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO33_RS11460 (QAO33_11455) yajC 2375364..2375624 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QAO33_RS11465 (QAO33_11460) tgt 2375643..2376782 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAO33_RS11470 (QAO33_11465) queA 2376805..2377830 (-) 1026 WP_121616948.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAO33_RS11475 (QAO33_11470) ruvB 2377832..2378836 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAO33_RS11480 (QAO33_11475) ruvA 2378868..2379470 (-) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  QAO33_RS11485 (QAO33_11480) - 2379484..2379939 (-) 456 WP_000368902.1 ACT domain-containing protein -
  QAO33_RS11490 (QAO33_11485) obgE 2379952..2381244 (-) 1293 WP_371092648.1 GTPase ObgE -
  QAO33_RS11495 (QAO33_11490) rpmA 2381864..2382148 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAO33_RS11500 (QAO33_11495) - 2382160..2382480 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAO33_RS11505 (QAO33_11500) rplU 2382486..2382794 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAO33_RS11510 (QAO33_11505) mreD 2383156..2383686 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=747557 QAO33_RS11480 WP_000271551.1 2378868..2379470(-) (ruvA) [Staphylococcus aureus strain GE-MSSA33]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=747557 QAO33_RS11480 WP_000271551.1 2378868..2379470(-) (ruvA) [Staphylococcus aureus strain GE-MSSA33]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425