Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FJMB_RS01930 Genome accession   NZ_AP024687
Coordinates   438561..439193 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain FUJ80154     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 433561..444193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJMB_RS01905 (FJMB80154_03740) yhfG 433694..433861 (+) 168 WP_022646195.1 YhfG family protein -
  FJMB_RS01910 (FJMB80154_03750) fic 433851..434453 (+) 603 WP_022646194.1 putative adenosine monophosphate-protein transferase Fic -
  FJMB_RS01915 (FJMB80154_03760) pabA 434485..435048 (+) 564 WP_022646193.1 aminodeoxychorismate synthase component 2 -
  FJMB_RS01920 (FJMB80154_03770) argD 435134..436357 (+) 1224 WP_016233602.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FJMB_RS01925 (FJMB80154_03780) yhfK 436420..438510 (-) 2091 WP_022646192.1 YccS/YhfK family putative transporter -
  FJMB_RS01930 (FJMB80154_03790) crp 438561..439193 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FJMB_RS01935 (FJMB80154_03800) yhfA 439495..439899 (+) 405 WP_001148908.1 OsmC family protein -
  FJMB_RS01940 (FJMB80154_03810) prkB 439954..440823 (-) 870 WP_001274680.1 phosphoribulokinase -
  FJMB_RS01945 (FJMB80154_03820) yheU 440877..441095 (-) 219 WP_000907085.1 YheU family protein -
  FJMB_RS01950 (FJMB80154_03830) yheT 441089..442111 (-) 1023 WP_022646191.1 hydrolase -
  FJMB_RS01955 (FJMB80154_03840) yheS 442111..444024 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=74737 FJMB_RS01930 WP_000242755.1 438561..439193(-) (crp) [Escherichia coli strain FUJ80154]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=74737 FJMB_RS01930 WP_000242755.1 438561..439193(-) (crp) [Escherichia coli strain FUJ80154]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment