Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAO20_RS13845 Genome accession   NZ_CP123106
Coordinates   2765200..2765802 (+) Length   200 a.a.
NCBI ID   WP_000271548.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2760200..2770802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS13810 (QAO20_13780) mreC 2760409..2761251 (+) 843 WP_000911035.1 rod shape-determining protein MreC -
  QAO20_RS13815 (QAO20_13785) mreD 2761251..2761781 (+) 531 WP_111065188.1 rod shape-determining protein MreD -
  QAO20_RS13820 (QAO20_13790) rplU 2762143..2762451 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAO20_RS13825 (QAO20_13795) - 2762457..2762777 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAO20_RS13830 (QAO20_13800) rpmA 2762789..2763073 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAO20_RS13835 (QAO20_13805) obgE 2763426..2764718 (+) 1293 WP_000496098.1 GTPase ObgE -
  QAO20_RS13840 (QAO20_13810) - 2764731..2765186 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QAO20_RS13845 (QAO20_13815) ruvA 2765200..2765802 (+) 603 WP_000271548.1 Holliday junction branch migration protein RuvA Machinery gene
  QAO20_RS13850 (QAO20_13820) ruvB 2765834..2766838 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAO20_RS13855 (QAO20_13825) queA 2766840..2767865 (+) 1026 WP_001019181.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAO20_RS13860 (QAO20_13830) tgt 2767888..2769027 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAO20_RS13865 (QAO20_13835) yajC 2769046..2769306 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22278.46 Da        Isoelectric Point: 6.0240

>NTDB_id=746950 QAO20_RS13845 WP_000271548.1 2765200..2765802(+) (ruvA) [Staphylococcus aureus strain IT-MSSA50]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELSKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=746950 QAO20_RS13845 WP_000271548.1 2765200..2765802(+) (ruvA) [Staphylococcus aureus strain IT-MSSA50]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTTCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGCTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTTCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTAAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425