Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAY70_RS01950 Genome accession   NZ_CP123099
Coordinates   355749..356351 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain IT-MSSA55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350749..361351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY70_RS01920 (QAY70_01915) mreD 351275..351805 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  QAY70_RS01925 (QAY70_01920) rplU 352167..352475 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAY70_RS01930 (QAY70_01925) - 352481..352801 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAY70_RS01935 (QAY70_01930) rpmA 352813..353097 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAY70_RS01940 (QAY70_01935) obgE 353975..355267 (+) 1293 WP_000496103.1 GTPase ObgE -
  QAY70_RS01945 (QAY70_01940) - 355280..355735 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QAY70_RS01950 (QAY70_01945) ruvA 355749..356351 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QAY70_RS01955 (QAY70_01950) ruvB 356383..357387 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAY70_RS01960 (QAY70_01955) queA 357389..358414 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAY70_RS01965 (QAY70_01960) tgt 358437..359576 (+) 1140 WP_001112049.1 tRNA guanosine(34) transglycosylase Tgt -
  QAY70_RS01970 (QAY70_01965) yajC 359595..359855 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=746610 QAY70_RS01950 WP_000271547.1 355749..356351(+) (ruvA) [Staphylococcus aureus strain IT-MSSA55]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=746610 QAY70_RS01950 WP_000271547.1 355749..356351(+) (ruvA) [Staphylococcus aureus strain IT-MSSA55]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425