Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP5506_RS05460 Genome accession   NZ_CP122962
Coordinates   1101283..1101864 (-) Length   193 a.a.
NCBI ID   WP_162927358.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1096283..1106864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS05440 (CFBP5506_05440) - 1098654..1099283 (+) 630 WP_080790741.1 MarC family protein -
  CFBP5506_RS05445 (CFBP5506_05445) - 1099416..1100564 (+) 1149 WP_080790740.1 HPP family protein -
  CFBP5506_RS05450 (CFBP5506_05450) - 1100642..1100917 (-) 276 WP_080790739.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CFBP5506_RS05455 (CFBP5506_05455) - 1100914..1101189 (-) 276 WP_080790738.1 type II toxin-antitoxin system ParD family antitoxin -
  CFBP5506_RS05460 (CFBP5506_05460) ssb 1101283..1101864 (-) 582 WP_162927358.1 single-stranded DNA-binding protein Machinery gene
  CFBP5506_RS05465 (CFBP5506_05465) uvrA 1102128..1105049 (+) 2922 WP_080790737.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP5506_RS05470 (CFBP5506_05470) - 1105106..1105906 (+) 801 WP_080790736.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20614.49 Da        Isoelectric Point: 4.7391

>NTDB_id=744685 CFBP5506_RS05460 WP_162927358.1 1101283..1101864(-) (ssb) [Agrobacterium tumefaciens strain CFBP5506]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGRSGGGDFGGGNDYGSGGGSSYGGG
YDQQSSSRGGSSRSGGGQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=744685 CFBP5506_RS05460 WP_162927358.1 1101283..1101864(-) (ssb) [Agrobacterium tumefaciens strain CFBP5506]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
TGTGGGCGCCGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAATCTGCGCATTGCAACTTCGGAGACCT
GGCGAGACCGTAACAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTCTTTAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATTGAAGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGAC
CGGCAACGACCGCTACTCCACGGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGTGAGG
GCGGCGGCCGTAGCGGCGGTGGAGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGCGGCGGT
TACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTTCCCGTAGCGGAGGCGGCCAGCCTTCCGGCGGCTTCTCCAACGACAT
GGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

91.71

0.456
  ssb Glaesserella parasuis strain SC1401

44.615

100

0.451