Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CFBP5506_RS05465 Genome accession   NZ_CP122962
Coordinates   1102128..1105049 (+) Length   973 a.a.
NCBI ID   WP_080790737.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097128..1110049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS05440 (CFBP5506_05440) - 1098654..1099283 (+) 630 WP_080790741.1 MarC family protein -
  CFBP5506_RS05445 (CFBP5506_05445) - 1099416..1100564 (+) 1149 WP_080790740.1 HPP family protein -
  CFBP5506_RS05450 (CFBP5506_05450) - 1100642..1100917 (-) 276 WP_080790739.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CFBP5506_RS05455 (CFBP5506_05455) - 1100914..1101189 (-) 276 WP_080790738.1 type II toxin-antitoxin system ParD family antitoxin -
  CFBP5506_RS05460 (CFBP5506_05460) ssb 1101283..1101864 (-) 582 WP_162927358.1 single-stranded DNA-binding protein Machinery gene
  CFBP5506_RS05465 (CFBP5506_05465) uvrA 1102128..1105049 (+) 2922 WP_080790737.1 excinuclease ABC subunit UvrA Machinery gene
  CFBP5506_RS05470 (CFBP5506_05470) - 1105106..1105906 (+) 801 WP_080790736.1 DUF72 domain-containing protein -
  CFBP5506_RS05475 (CFBP5506_05475) dusA 1105913..1106923 (-) 1011 WP_080790735.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CFBP5506_RS05480 (CFBP5506_05480) - 1107062..1107751 (+) 690 WP_080790734.1 fumarylacetoacetate hydrolase family protein -
  CFBP5506_RS05485 (CFBP5506_05485) - 1107785..1108318 (+) 534 WP_080790733.1 gamma carbonic anhydrase family protein -
  CFBP5506_RS05490 (CFBP5506_05490) zur 1108355..1108768 (-) 414 WP_080790732.1 zinc uptake transcriptional repressor Zur -
  CFBP5506_RS05495 (CFBP5506_05495) znuB 1108765..1109583 (-) 819 WP_080790731.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107035.96 Da        Isoelectric Point: 6.6066

>NTDB_id=744686 CFBP5506_RS05465 WP_080790737.1 1102128..1105049(+) (uvrA) [Agrobacterium tumefaciens strain CFBP5506]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSELSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRLHIGEVTEMSIRTARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEIVATGTPEDIVKVERSHTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=744686 CFBP5506_RS05465 WP_080790737.1 1102128..1105049(+) (uvrA) [Agrobacterium tumefaciens strain CFBP5506]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGTTCGGGCAAGTCGTCGCTTGCCTTCGACACGATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAAAGCCTTTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAACCGGATGTCGATCAGATCGAC
GGCCTGTCGCCGGCTATTTCCATCGAGCAGAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTATGACTATATGCGCCTGCTGTTCGCGCGTGTCGGCGTGCCCTATTCGCCGGCAACCGGCCTGCCGATCGAAAGCCAGA
CGGTCAGCCAGATGGTCGACCGGATCCTCGCTTTCGAGGAAGGCACGCGTCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAGTACAAGAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGTGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTGCCGGCCCTCGACAAGAAGTACAAGCACGATATCGATGTGGTGGTCGACCGCGCGGTGGTGCGCC
CGGATATGGCGGCGCGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCC
GACAAGCCCTTGCCACCGGAAGAAACCGCCGCTGGCGGCTCCGCCAACAAGTCGCTCAACGAGACCCATGAGCGGGTTCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAACCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCCAGCTGCGACGGTCTCGGCTCGCAGCAGAAGGTCGATGAAAACCTCATCGTGCCGGAGCCGGCC
CGCACGCTGCGCGACGGCGCGATTGCGCCCTGGGCCAAATCCTCCTCGCCCTATTACAACCAGACGCTGGAAGCGCTCGG
CAAAGCCTTCGGTTTCAAGCTGTCGAGCAAATGGTCGGAGCTTTCGAAGGAAGCGCAGCACGCCATCCTGCAGGGCACCG
ATGACAAGATCGAGTTCAACTATCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAACTTCGAAGGCATCGTGCCCAAT
CTGGAGCGTCGCTGGAAAGAGACTGACAGCGCCTGGGCGCGCGAGGAAATCGAACGTTACATGTCGGCAGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGGCTGCACATCGGTGAAGTCACCGAAA
TGTCGATCCGCACGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAACCTCAACGCCAAGCAGAACGAAATCGCAGTGCGC
ATCCTCAAGGAAATCCGCGAGCGCCTGCGCTTCCTCAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACAGGCGTTCTCTATGTTC
TCGACGAGCCGTCAATCGGCCTGCACCAGCGCGACAACGCCCGCCTGCTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACCGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCCGATTATGTCGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGCTCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TTTCGGGCGAACTCGGCGTCGCCGTGCCTGCTGAGCGCCGCAAGCCCAAGAAGGGCCGCGAGATCAAGGTGTTTGGCGCG
CGCGGCAACAACCTGAAGAATGTCACGGCAGCTGTGCCGCTCGGTGTTTTCACTGCAGTAACCGGCGTTTCAGGCGGCGG
CAAATCCACATTCCTGATCGAGACGCTTTATAAATCGGCGGCGCGCCGGGTGATGGGTGCGCGCGAAATCCCGGCCGAGC
ACGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCGATTGGCCGCACACCGCGTTCC
AACCCGGCCACCTATACCGGCGCGTTCACGCCGATCCGCGACTGGTTCGCCGGTCTGCCGGAAGCCAAGGCGCGCGGTTA
TGCGCCGGGCCGTTTCTCCTTCAACGTTAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGATGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGTCACGGCAAGCGTTACAATCGCGAGACGCTCGATGTCACC
TTCAAGGGCAAGTCCATAGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAGTTCTTCGCCGCCGTCCCGGCCGT
GCGCGACAAGCTGCAATCGCTCTTCGATGTCGGCCTCGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCGAAACGCTCGACGGGCCGCACGCTCTATATACTCGACGAGCCG
ACGACCGGCCTGCATTTCCACGATGTCAACAAGCTCCTGGAAATGCTGCATGCGCTGGTGGAACAGGGCAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATCGGGCCTGAAGGCGGCACGGGCGGCG
GCGAAATCGTGGCGACCGGCACGCCGGAGGACATCGTGAAGGTTGAGCGTTCCCATACCGGTCATTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCGGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)

UvrA interaction domain (UvrA_inter)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae TIGR4

57.351

98.561

0.565
  uvrA Streptococcus pneumoniae D39

57.351

98.561

0.565