Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QBD03_RS06100 Genome accession   NZ_CP122959
Coordinates   1260249..1262027 (-) Length   592 a.a.
NCBI ID   WP_280102544.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255249..1267027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06080 (QBD03_06080) - 1256952..1257422 (-) 471 WP_025015740.1 MarR family transcriptional regulator -
  QBD03_RS06085 (QBD03_06085) - 1257524..1258363 (-) 840 WP_280102541.1 YitT family protein -
  QBD03_RS06090 (QBD03_06090) - 1258494..1259522 (-) 1029 WP_280102542.1 aldehyde reductase -
  QBD03_RS06095 (QBD03_06095) - 1259635..1260204 (+) 570 WP_280102543.1 TetR/AcrR family transcriptional regulator -
  QBD03_RS06100 (QBD03_06100) uvrC 1260249..1262027 (-) 1779 WP_280102544.1 excinuclease ABC subunit UvrC Machinery gene
  QBD03_RS06105 (QBD03_06105) - 1262107..1262838 (-) 732 WP_280102545.1 amino acid ABC transporter ATP-binding protein -
  QBD03_RS06110 (QBD03_06110) - 1262831..1264294 (-) 1464 WP_280102546.1 ABC transporter substrate-binding protein/permease -
  QBD03_RS06115 (QBD03_06115) - 1264429..1264581 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  QBD03_RS06120 (QBD03_06120) - 1264656..1264949 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QBD03_RS06125 (QBD03_06125) yihA 1264949..1265548 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QBD03_RS06130 (QBD03_06130) clpX 1265696..1266949 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67822.40 Da        Isoelectric Point: 9.6587

>NTDB_id=744635 QBD03_RS06100 WP_280102544.1 1260249..1262027(-) (uvrC) [Latilactobacillus sakei strain HUP1]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMVTAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKSLPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=744635 QBD03_RS06100 WP_280102544.1 1260249..1262027(-) (uvrC) [Latilactobacillus sakei strain HUP1]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTGCCGGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAACCTTAAGAACCGGGTCCGCTCATATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGGGATGTCAAAAAAGATGGTGGCTATTATTTTGGTCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTGCGGCGCTGTCAGGGCCATCAAGGCCGCCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGGGCTTGTTTCCAAGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAACGGGCAAGTCGACAATGTTAAAAAGGATTTAACGGAGAAAATGGTGACGGCCGCCCAGGAGA
TGCAATTTGAGCGGGCTGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTGTTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCGCGTTTAATTCGGCGGGAAAAACGCCTCTTTCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AATGGTATAACCGTAAGAATAATGTGTTACCACGGGAAATTCTCGTGCCAGATGGGATCGAAAAACAAGTCTTATCCGAT
ATTTTGCAAGTACCGATTCGAACGCCACAACGGGGAGAAAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTTCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGCCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACTGATCCGGTGTCGGCGATGGTC
ACATTCGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAAGTGATCTATCGCCGTTATTCACGCTTGTTAAAAGAGGGCAAATCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAGCTCAATGCCGCCAAAGACGTCTTAGAAAACGAACTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCACCGCCAGTTAC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATCTCGAAGACAGTTGCGCAAAC
CATTAAATTATCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)

Helix-hairpin-helix domain (HHH_5)

(542-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.596

99.155

0.502
  uvrC Streptococcus pneumoniae R6

50.256

99.155

0.498
  uvrC Streptococcus pneumoniae D39

50.256

99.155

0.498