Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QBD03_RS06130 Genome accession   NZ_CP122959
Coordinates   1265696..1266949 (-) Length   417 a.a.
NCBI ID   WP_011374761.1    Uniprot ID   Q38WR9
Organism   Latilactobacillus sakei strain HUP1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260696..1271949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06105 (QBD03_06105) - 1262107..1262838 (-) 732 WP_280102545.1 amino acid ABC transporter ATP-binding protein -
  QBD03_RS06110 (QBD03_06110) - 1262831..1264294 (-) 1464 WP_280102546.1 ABC transporter substrate-binding protein/permease -
  QBD03_RS06115 (QBD03_06115) - 1264429..1264581 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  QBD03_RS06120 (QBD03_06120) - 1264656..1264949 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QBD03_RS06125 (QBD03_06125) yihA 1264949..1265548 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QBD03_RS06130 (QBD03_06130) clpX 1265696..1266949 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QBD03_RS06135 (QBD03_06135) tig 1267159..1268454 (-) 1296 WP_011374762.1 trigger factor -
  QBD03_RS06140 (QBD03_06140) tuf 1268666..1269856 (-) 1191 WP_016265209.1 elongation factor Tu -
  QBD03_RS06145 (QBD03_06145) - 1270079..1271026 (-) 948 WP_280102547.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45644.28 Da        Isoelectric Point: 4.3589

>NTDB_id=744636 QBD03_RS06130 WP_011374761.1 1265696..1266949(-) (clpX) [Latilactobacillus sakei strain HUP1]
MLDDTETTNGPVTCSFCGKSQDQVKKIVAGPGVYICNECIDLCKEIIDEEFKDEAVNDLLEVPKPREILAILNDYVIGQT
EAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGSGKTFLAQTLARILNVPFAIADATTLTEAGYVGEDVEN
ILLKLLQNADFDVDRAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDT
TNILFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQFGIIPEFIGRIPITAALEKLTEDDLV
RILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHLAIERNTGARGLRSIIEEVMMDMMFDVPSREDVVKVLVTKEAV
DGTAKPQLFLADGQEAS

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=744636 QBD03_RS06130 WP_011374761.1 1265696..1266949(-) (clpX) [Latilactobacillus sakei strain HUP1]
ATGTTAGATGATACAGAAACAACGAATGGCCCTGTTACTTGTTCGTTTTGTGGTAAATCACAAGATCAAGTAAAGAAGAT
TGTGGCCGGCCCTGGTGTTTATATCTGTAATGAATGTATCGATCTCTGTAAAGAAATTATCGATGAAGAATTTAAAGATG
AAGCTGTTAATGACTTATTAGAAGTACCAAAACCACGCGAAATTCTTGCAATTTTAAATGATTATGTCATTGGTCAAACA
GAAGCTAAAAAGGCGCTCTCAGTTGCCGTTTATAACCATTACAAACGTGTTAACCAAATGACAGTTGCCGAAAAAGGTGA
TACTGAACTTCAAAAGAGTAATATCGCTTTAATCGGGCCTACTGGCTCAGGTAAGACATTCTTAGCCCAAACCTTAGCAC
GGATCCTCAACGTTCCATTTGCGATTGCAGATGCCACGACGTTGACGGAAGCTGGTTATGTTGGTGAAGATGTTGAGAAC
ATTCTCTTGAAGCTCTTGCAAAACGCTGATTTTGATGTTGATCGCGCTGAACGAGGCATTATTTATATTGATGAAATTGA
TAAGATTGCCAAGAAGAGCGAAAACGTCTCAATTACCCGTGATGTTTCTGGTGAAGGGGTGCAACAAGCACTCTTGAAGA
TTCTTGAAGGGACAATTGCTAGCGTGCCACCTCAGGGCGGACGTAAGCACCCACAACAAGAATTGATTCAAATCGACACA
ACTAATATTTTATTCATTATTGGTGGGGCCTTCGATGGCATCGAAACAATCGTTAAAAACCGATTAGGTGAAAAGACGAT
TGGTTTTGGTAGCAAAGCTGGCCAAGCGGTCGATGAAAATCAAAGCTTGATGCAACAAATCGTGACGGAAGATTTAATGC
AATTTGGGATTATCCCTGAATTCATTGGTCGGATTCCAATCACGGCTGCACTTGAAAAATTAACTGAAGACGACTTAGTT
CGGATCTTAACGGAACCTAAGAACGCCTTAGTTAAACAATATAGTAAATTGATGGCTTTAGACGATGTTGAACTAGAATT
CACGCCAGAGGCATTACATGCGATTGCTCACCTTGCAATTGAACGTAATACCGGTGCGCGTGGCCTCCGTTCAATCATCG
AAGAAGTCATGATGGATATGATGTTTGATGTACCAAGTCGCGAAGACGTTGTCAAAGTCTTAGTGACAAAAGAAGCCGTT
GATGGCACTGCTAAACCACAACTTTTCTTAGCTGATGGTCAAGAAGCGTCATAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(314-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-49)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

72.139

96.403

0.695
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.531

97.122

0.559