Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAP00_RS02865 Genome accession   NZ_CP122949
Coordinates   589536..590087 (+) Length   183 a.a.
NCBI ID   WP_309256864.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584536..595087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS02850 (QAP00_02855) cysS 584715..586112 (-) 1398 WP_309256861.1 cysteine--tRNA ligase -
  QAP00_RS02855 (QAP00_02860) murJ 586113..587573 (-) 1461 WP_309256862.1 murein biosynthesis integral membrane protein MurJ -
  QAP00_RS02860 (QAP00_02865) - 587666..589510 (+) 1845 WP_309256863.1 FapA family protein -
  QAP00_RS02865 (QAP00_02870) ruvA 589536..590087 (+) 552 WP_309256864.1 Holliday junction branch migration protein RuvA Machinery gene
  QAP00_RS02870 (QAP00_02875) - 590269..591553 (+) 1285 Protein_549 DUF3519 domain-containing protein -
  QAP00_RS02875 (QAP00_02880) - 591959..593031 (+) 1073 Protein_550 site-specific integrase -
  QAP00_RS02880 (QAP00_02885) - 593113..593796 (-) 684 WP_309256865.1 CAAX protease -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20191.80 Da        Isoelectric Point: 9.4305

>NTDB_id=744274 QAP00_RS02865 WP_309256864.1 589536..590087(+) (ruvA) [Helicobacter pylori strain BS22]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVVKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENKPARNEVFLALESLGFKSTEINQV
LKTLKPNLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=744274 QAP00_RS02865 WP_309256864.1 589536..590087(+) (ruvA) [Helicobacter pylori strain BS22]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTGGTTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAACGAATTTGAAAACATTATCGCCACCAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAATAAACCCGCACGCAATGAGGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAACCAAGTC
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAGCAGCGATTAAAGAAGCCCTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

96.175

100

0.962
  ruvA Streptococcus pneumoniae TIGR4

34.359

100

0.366
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366