Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE74_RS00235 Genome accession   NZ_AP019841
Coordinates   50622..51326 (+) Length   234 a.a.
NCBI ID   WP_147002683.1    Uniprot ID   A0A510KPX7
Organism   Leptotrichia wadei strain JMUB3936     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 45622..56326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE74_RS00215 (JMUB3936_0047) - 45977..46840 (+) 864 WP_147002680.1 YwqG family protein -
  FVE74_RS00220 (JMUB3936_0048) pheT 46955..49354 (+) 2400 WP_147004533.1 phenylalanine--tRNA ligase subunit beta -
  FVE74_RS00225 (JMUB3936_0049) - 49425..49919 (+) 495 WP_147002681.1 HRDC domain-containing protein -
  FVE74_RS00230 (JMUB3936_0050) - 50088..50426 (-) 339 WP_147002682.1 hypothetical protein -
  FVE74_RS00235 (JMUB3936_0051) scnR 50622..51326 (+) 705 WP_147002683.1 response regulator transcription factor Regulator
  FVE74_RS00240 (JMUB3936_0052) - 51328..52716 (+) 1389 WP_147002684.1 sensor histidine kinase -
  FVE74_RS00245 (JMUB3936_0053) - 52813..53469 (+) 657 WP_147002685.1 thiamine diphosphokinase -
  FVE74_RS00250 (JMUB3936_0054) - 53489..54709 (+) 1221 WP_147002686.1 RluA family pseudouridine synthase -
  FVE74_RS00255 (JMUB3936_0055) - 54914..56287 (+) 1374 WP_147002687.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26826.11 Da        Isoelectric Point: 5.5278

>NTDB_id=74352 FVE74_RS00235 WP_147002683.1 50622..51326(+) (scnR) [Leptotrichia wadei strain JMUB3936]
MVEKYLRDKCILIVDDEQEILNMVVSILADGGYENTRTARNVKEALKCVEEKKPDFVILDVMLPDGNGFELLEKLRKDSD
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEENFIVNLNGCQIDFSRGEIVKDGGKFSLTA
KEYELLKTLYRNAGRIVTIDSLCEAIWGENAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74352 FVE74_RS00235 WP_147002683.1 50622..51326(+) (scnR) [Leptotrichia wadei strain JMUB3936]
ATGGTTGAAAAATATTTGAGAGATAAATGTATTTTAATTGTGGATGATGAGCAGGAAATTTTGAATATGGTTGTGTCGAT
TTTGGCAGATGGAGGTTATGAAAATACAAGGACTGCTAGAAATGTGAAAGAGGCTTTAAAATGTGTTGAAGAAAAGAAAC
CTGATTTTGTGATATTGGATGTGATGCTTCCAGATGGGAATGGTTTTGAGTTGCTTGAAAAGTTGAGAAAGGACAGCGAT
TATCCGATTTTATTTTTAACAGCACGAGGAGAAGATGAAGACAAGTTTAAAGGATTTGGATTGGGGGCGGACGATTATAT
TGTAAAACCTTTTTTGCCAAAAGAACTTTTGTTTAGGATTACGGCAATTTTGCGACGGACTTACAAGGAAGAGAATTTTA
TTGTGAACTTAAATGGCTGTCAGATTGATTTTTCACGAGGAGAAATTGTAAAAGATGGGGGGAAATTTTCCTTAACTGCA
AAGGAATACGAACTACTCAAAACTTTATACAGAAATGCTGGACGAATTGTAACGATTGATTCGCTCTGTGAAGCTATTTG
GGGAGAAAATGCTTATGTTTACTCAAATTCTTTGATGACACATATTAGACGGATTAGGGAAAAAATTGAGAAAGAGCCGT
CACATCCAGTTTCTCTTATAACAATGAAAGGATTAGGTTATAAATTAATCGTGGAGGGAAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510KPX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.111

96.154

0.491
  vicR Streptococcus mutans UA159

39.738

97.863

0.389
  micA Streptococcus pneumoniae Cp1015

38.627

99.573

0.385

Multiple sequence alignment