Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE79_RS04750 Genome accession   NZ_AP019840
Coordinates   1034203..1034907 (-) Length   234 a.a.
NCBI ID   WP_026746573.1    Uniprot ID   A0A510KZ08
Organism   Leptotrichia trevisanii strain JMUB3935     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029203..1039907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE79_RS04715 (JMUB3935_0958) - 1029877..1030332 (+) 456 WP_146996362.1 PTS sugar transporter subunit IIA -
  FVE79_RS04720 (JMUB3935_0959) - 1030542..1030928 (+) 387 WP_026748480.1 adhesion protein FadA -
  FVE79_RS04725 (JMUB3935_0960) - 1030952..1031338 (+) 387 WP_026748479.1 hypothetical protein -
  FVE79_RS04730 (JMUB3935_0961) - 1031414..1031902 (+) 489 WP_146996363.1 hypothetical protein -
  FVE79_RS04735 (JMUB3935_0962) - 1031957..1032154 (+) 198 WP_026748477.1 hypothetical protein -
  FVE79_RS04740 (JMUB3935_0963) - 1032127..1032651 (+) 525 WP_146996364.1 OmpA family protein -
  FVE79_RS04745 (JMUB3935_0964) - 1032813..1034072 (-) 1260 WP_232051247.1 sensor histidine kinase -
  FVE79_RS04750 (JMUB3935_0965) scnR 1034203..1034907 (-) 705 WP_026746573.1 response regulator transcription factor Regulator
  FVE79_RS04755 (JMUB3935_0966) - 1035106..1035450 (+) 345 WP_026746572.1 hypothetical protein -
  FVE79_RS04760 (JMUB3935_0967) - 1035892..1038615 (+) 2724 WP_146996366.1 cation-translocating P-type ATPase -
  FVE79_RS04765 (JMUB3935_0968) - 1038679..1038960 (+) 282 WP_026748472.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26786.11 Da        Isoelectric Point: 5.0501

>NTDB_id=74344 FVE79_RS04750 WP_026746573.1 1034203..1034907(-) (scnR) [Leptotrichia trevisanii strain JMUB3935]
MIEKYLTNKCILIVDDEQEILDMIVSIFADYGYKNIQTAKNVKDTMKCVAEKQPDLAILDVMLPDGNGFDLLEKLRKDSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEESPIVNLSGCQIDFSCGEIIKDNKNISLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEEK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74344 FVE79_RS04750 WP_026746573.1 1034203..1034907(-) (scnR) [Leptotrichia trevisanii strain JMUB3935]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAACAGGAAATTTTGGATATGATTGTATCAAT
TTTTGCTGATTATGGGTATAAAAATATACAGACTGCAAAAAATGTGAAAGATACTATGAAATGTGTTGCAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGACGGGAACGGTTTTGACTTACTGGAAAAGTTGAGAAAAGATAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAGGATGAGGATAAATTTAAGGGCTTTGGATTGGGGGCGGACGACTATAT
TGTGAAACCTTTTTTACCAAAAGAGCTTTTATTTAGAATTACTGCTATTTTACGGCGAACTTACAAAGAAGAAAGTCCGA
TTGTAAATTTGAGCGGTTGTCAAATTGACTTTTCCTGTGGAGAAATTATAAAAGATAACAAAAATATATCATTAACTGCA
AAGGAATATGAATTATTACAAACTCTTTACCGAAACGCTGGACGTATCGTAACCATTGATACACTGTGTGAAGCTGTATG
GGGTGAAAACGCCTATGTTTATACAAATTCTCTGATGACACATATAAGACGCATTAGAGAAAAAATTGAAATCAACCCTT
CCCATCCGGTATCACTAATAACAATGAAAGGGTTAGGTTATAAACTAATTGTGGAGGAAAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510KZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.673

95.299

0.483
  vicR Streptococcus mutans UA159

39.738

97.863

0.389
  micA Streptococcus pneumoniae Cp1015

37.391

98.291

0.368

Multiple sequence alignment