Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE76_RS00210 Genome accession   NZ_AP019835
Coordinates   48366..49070 (+) Length   234 a.a.
NCBI ID   WP_146963229.1    Uniprot ID   A0A510KC79
Organism   Leptotrichia wadei strain JMUB3934     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 43366..54070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE76_RS11900 (JMUB3934_0041) - 43753..44145 (+) 393 WP_232052767.1 hypothetical protein -
  FVE76_RS11905 (JMUB3934_0042) - 44145..44456 (+) 312 WP_232052768.1 hypothetical protein -
  FVE76_RS00195 (JMUB3934_0043) pheT 44737..47136 (+) 2400 WP_146963225.1 phenylalanine--tRNA ligase subunit beta -
  FVE76_RS00200 (JMUB3934_0044) - 47163..47657 (+) 495 WP_146963226.1 HRDC domain-containing protein -
  FVE76_RS00205 (JMUB3934_0045) - 47814..48158 (-) 345 WP_146963227.1 hypothetical protein -
  FVE76_RS00210 (JMUB3934_0046) scnR 48366..49070 (+) 705 WP_146963229.1 response regulator transcription factor Regulator
  FVE76_RS00215 (JMUB3934_0047) - 49072..50487 (+) 1416 WP_146963232.1 sensor histidine kinase -
  FVE76_RS00220 (JMUB3934_0048) - 50678..51571 (+) 894 WP_146963234.1 hypothetical protein -
  FVE76_RS11835 (JMUB3934_0049) - 52032..52367 (+) 336 WP_197735248.1 helix-turn-helix domain-containing protein -
  FVE76_RS11840 (JMUB3934_0050) - 52493..52720 (+) 228 WP_197735249.1 integrase core domain-containing protein -
  FVE76_RS00230 (JMUB3934_0051) - 52890..53108 (+) 219 WP_146963236.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26816.25 Da        Isoelectric Point: 6.4889

>NTDB_id=74335 FVE76_RS00210 WP_146963229.1 48366..49070(+) (scnR) [Leptotrichia wadei strain JMUB3934]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKTSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSRGEIIKDNKNIPLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74335 FVE76_RS00210 WP_146963229.1 48366..49070(+) (scnR) [Leptotrichia wadei strain JMUB3934]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGTGTGAAGGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGATGGAAATGGTTTTGAATTACTGGAAAAGTTAAGAAAAACCAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAGGGCTTTGGATTAGGGGCGGACGACTATAT
TGTAAAACCTTTTTTGCCAAAGGAGCTTTTATTTAGAATTACAGCAATTTTACGGCGAACTTACAAAAAAGAAAGTCCAA
TTGTAAATTTAAATGGCTGTCAAATTGATTTTTCTCGTGGAGAAATTATAAAAGATAATAAAAATATACCGTTAACCGCA
AAGGAATATGAATTATTACAGACTCTTTACCGAAATGCTGGACGTATTGTAACCATAGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTTTATACAAATTCACTGATGACACATATAAGACGTATTAGAGAAAAAATTGAAATTAACCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510KC79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.299

0.5
  vicR Streptococcus mutans UA159

40.343

99.573

0.402
  micA Streptococcus pneumoniae Cp1015

38.261

98.291

0.376

Multiple sequence alignment