Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE71_RS00250 Genome accession   NZ_AP019834
Coordinates   55241..55945 (+) Length   234 a.a.
NCBI ID   WP_018499242.1    Uniprot ID   A0A510JR51
Organism   Leptotrichia wadei strain JMUB3933     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 50241..60945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE71_RS11320 (JMUB3933_0049) - 50423..50815 (+) 393 WP_232049829.1 hypothetical protein -
  FVE71_RS11325 (JMUB3933_0050) - 50815..51129 (+) 315 WP_232049830.1 hypothetical protein -
  FVE71_RS00235 (JMUB3933_0051) pheT 51613..54012 (+) 2400 WP_146959359.1 phenylalanine--tRNA ligase subunit beta -
  FVE71_RS00240 (JMUB3933_0052) - 54038..54532 (+) 495 WP_146959361.1 HRDC domain-containing protein -
  FVE71_RS00245 (JMUB3933_0053) - 54689..55033 (-) 345 WP_094079708.1 hypothetical protein -
  FVE71_RS00250 (JMUB3933_0054) scnR 55241..55945 (+) 705 WP_018499242.1 response regulator transcription factor Regulator
  FVE71_RS00255 (JMUB3933_0055) - 55947..57335 (+) 1389 WP_146959364.1 sensor histidine kinase -
  FVE71_RS00265 (JMUB3933_0056) - 57564..57971 (+) 408 WP_146959366.1 polyketide cyclase -
  FVE71_RS00270 (JMUB3933_0057) - 58038..58427 (+) 390 WP_269472520.1 MarR family winged helix-turn-helix transcriptional regulator -
  FVE71_RS00275 (JMUB3933_0058) - 58965..59630 (+) 666 WP_146959370.1 thiamine diphosphokinase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26785.24 Da        Isoelectric Point: 5.9152

>NTDB_id=74326 FVE71_RS00250 WP_018499242.1 55241..55945(+) (scnR) [Leptotrichia wadei strain JMUB3933]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKVGD
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSRGEIIKDNKNIPLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74326 FVE71_RS00250 WP_018499242.1 55241..55945(+) (scnR) [Leptotrichia wadei strain JMUB3933]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGACGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGTGTGAAGGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATATTGGATGTTATGCTTCCAGATGGGAACGGTTTTGAATTACTGGAAAAGTTAAGAAAAGTTGGTGAT
TATCCAATATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAGGGCTTTGGATTGGGGGCGGACGACTACAT
TGTAAAGCCTTTTTTACCAAAAGAACTTTTATTTAGAATTACTGCTATTTTGCGGCGAACTTACAAAAAAGAAAGTCCAA
TTGTAAATTTAAATGGCTGTCAAATTGATTTTTCTCGTGGAGAAATTATAAAAGATAATAAAAATATACCGTTAACCGCA
AAGGAATATGAATTATTACAGACTCTTTACCGAAATGCTGGACGTATTGTAACCATAGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTCTATACAAATTCACTGATGACACATATAAGACGTATTAGAGAAAAAATTGAAATTAATCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510JR51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.57

95.299

0.491
  vicR Streptococcus mutans UA159

39.914

99.573

0.397
  micA Streptococcus pneumoniae Cp1015

37.391

98.291

0.368

Multiple sequence alignment