Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JMUB4039_RS04715 Genome accession   NZ_AP019831
Coordinates   996168..996872 (-) Length   234 a.a.
NCBI ID   WP_155282596.1    Uniprot ID   A0A510K2A9
Organism   Leptotrichia trevisanii strain JMUB3870     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 991168..1001872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB4039_RS04680 (JMUB3870_0952) - 991848..992303 (+) 456 WP_155282593.1 PTS sugar transporter subunit IIA -
  JMUB4039_RS04685 (JMUB3870_0953) - 992513..992899 (+) 387 WP_026748480.1 adhesion protein FadA -
  JMUB4039_RS04690 (JMUB3870_0954) - 992941..993309 (+) 369 WP_232056155.1 hypothetical protein -
  JMUB4039_RS04695 (JMUB3870_0955) - 993385..993873 (+) 489 WP_026748478.1 hypothetical protein -
  JMUB4039_RS04700 (JMUB3870_0956) - 993928..994125 (+) 198 WP_026748477.1 hypothetical protein -
  JMUB4039_RS04705 (JMUB3870_0957) - 994098..994622 (+) 525 WP_155282594.1 OmpA family protein -
  JMUB4039_RS04710 (JMUB3870_0958) - 994778..996037 (-) 1260 WP_232056156.1 sensor histidine kinase KdpD -
  JMUB4039_RS04715 (JMUB3870_0959) scnR 996168..996872 (-) 705 WP_155282596.1 response regulator transcription factor Regulator
  JMUB4039_RS04720 (JMUB3870_0960) - 997071..997415 (+) 345 WP_026746572.1 hypothetical protein -
  JMUB4039_RS04725 (JMUB3870_0961) - 997857..1000553 (+) 2697 WP_155282597.1 cation-translocating P-type ATPase -
  JMUB4039_RS04730 (JMUB3870_0962) - 1000649..1000930 (+) 282 WP_155282598.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26772.08 Da        Isoelectric Point: 5.0501

>NTDB_id=74318 JMUB4039_RS04715 WP_155282596.1 996168..996872(-) (scnR) [Leptotrichia trevisanii strain JMUB3870]
MIEKYLTNKCILIVDDEQEILDMIVSIFADYGYKNVQTAKNVKDTMKCVAEKQPDLAILDVMLPDGNGFDLLEKLRKDSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEESPIVNLSGCQIDFSCGEIIKDNKNISLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEEK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74318 JMUB4039_RS04715 WP_155282596.1 996168..996872(-) (scnR) [Leptotrichia trevisanii strain JMUB3870]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAACAGGAAATTTTGGATATGATTGTATCAAT
TTTTGCTGATTATGGGTATAAAAATGTACAGACTGCAAAAAATGTGAAAGATACTATGAAATGTGTTGCAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGACGGGAACGGTTTTGACTTACTGGAAAAGTTGAGAAAAGATAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAGGATGAGGATAAATTTAAAGGCTTTGGATTGGGGGCGGACGACTATAT
TGTGAAACCTTTTTTACCAAAAGAGCTTTTATTTAGAATTACTGCTATTTTACGGCGAACTTACAAAGAAGAAAGTCCGA
TTGTAAATTTGAGCGGTTGTCAAATTGACTTTTCCTGTGGAGAAATTATAAAAGATAATAAAAATATATCATTAACTGCA
AAGGAATATGAATTATTACAAACTCTTTACCGAAACGCTGGACGTATCGTAACCATTGATACACTGTGTGAAGCTGTATG
GGGTGAAAACGCCTATGTTTATACAAATTCTCTGATGACACATATAAGACGCATTAGAGAAAAAATTGAAATCAACCCTT
CCCATCCTGTATCACTAATAACAATGAAAGGGTTAGGTTATAAACTAATTGTGGAGGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510K2A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.673

95.299

0.483
  vicR Streptococcus mutans UA159

39.301

97.863

0.385
  micA Streptococcus pneumoniae Cp1015

37.826

98.291

0.372

Multiple sequence alignment