Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE73_RS00255 Genome accession   NZ_AP019829
Coordinates   58327..59031 (-) Length   234 a.a.
NCBI ID   WP_018499242.1    Uniprot ID   A0A510JR51
Organism   Leptotrichia wadei strain JCM16777     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 53327..64031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE73_RS00235 (JCM16777_0049) - 54628..55293 (-) 666 WP_018499248.1 thiamine diphosphokinase -
  FVE73_RS00240 (JCM16777_0050) - 55844..56182 (-) 339 WP_232058515.1 MarR family winged helix-turn-helix transcriptional regulator -
  FVE73_RS00245 (JCM16777_0051) - 56300..56707 (-) 408 WP_018499245.1 polyketide cyclase -
  FVE73_RS00250 (JCM16777_0052) - 56937..58196 (-) 1260 WP_232058516.1 sensor histidine kinase KdpD -
  FVE73_RS00255 (JCM16777_0053) scnR 58327..59031 (-) 705 WP_018499242.1 response regulator transcription factor Regulator
  FVE73_RS00260 (JCM16777_0054) - 59237..59581 (+) 345 WP_018499241.1 hypothetical protein -
  FVE73_RS00265 (JCM16777_0055) - 59697..60035 (+) 339 WP_146997809.1 helix-turn-helix domain-containing protein -
  FVE73_RS10780 - 60151..60306 (+) 156 WP_232058517.1 hypothetical protein -
  FVE73_RS00275 - 60319..60735 (+) 417 WP_390624486.1 transposase -
  FVE73_RS00280 - 60764..60940 (+) 177 WP_018498382.1 hypothetical protein -
  FVE73_RS00285 (JCM16777_0058) - 61093..61506 (-) 414 WP_018498381.1 hypothetical protein -
  FVE73_RS00290 (JCM16777_0059) - 61582..62361 (-) 780 WP_018498380.1 SDR family oxidoreductase -
  FVE73_RS00295 (JCM16777_0060) - 62449..62838 (+) 390 WP_018498379.1 MerR family transcriptional regulator -
  FVE73_RS00300 (JCM16777_0061) - 62874..63602 (+) 729 WP_018498378.1 hypothetical protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26785.24 Da        Isoelectric Point: 5.9152

>NTDB_id=74311 FVE73_RS00255 WP_018499242.1 58327..59031(-) (scnR) [Leptotrichia wadei strain JCM16777]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKVGD
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSRGEIIKDNKNIPLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74311 FVE73_RS00255 WP_018499242.1 58327..59031(-) (scnR) [Leptotrichia wadei strain JCM16777]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGATATAAAAATATACAGACTGCAAAAAGCGTGAAGGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGATGGAAACGGTTTTGAATTACTGGAAAAGTTAAGAAAAGTTGGTGAT
TATCCAATATTATTTCTTACAGCACGTGGAGAGGATGAGGATAAATTCAAAGGCTTTGGATTGGGGGCGGACGACTATAT
TGTAAAACCTTTTTTGCCAAAGGAGCTTTTATTTAGAATTACTGCTATTTTGCGGCGAACTTACAAAAAAGAAAGCCCAA
TTGTGAATTTGAATGGCTGTCAAATTGATTTTTCACGTGGAGAAATTATAAAAGATAATAAAAATATACCGTTAACTGCA
AAGGAATATGAATTATTACAGACTCTTTATCGAAACGCAGGACGTATCGTAACCATTGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTTTATACAAATTCACTGATGACGCATATAAGACGCATTAGAGAAAAAATTGAAATTAATCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAATTAATTGTGGAGGGAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510JR51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.57

95.299

0.491
  vicR Streptococcus mutans UA159

39.914

99.573

0.397
  micA Streptococcus pneumoniae Cp1015

37.391

98.291

0.368

Multiple sequence alignment