Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FVE77_RS04780 Genome accession   NZ_AP019823
Coordinates   1014702..1015406 (-) Length   234 a.a.
NCBI ID   WP_026746573.1    Uniprot ID   A0A510KZ08
Organism   Leptotrichia hofstadii strain JCM16775     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009702..1020406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE77_RS04745 (JCM16775_0980) - 1010148..1010603 (+) 456 WP_006804579.1 PTS sugar transporter subunit IIA -
  FVE77_RS04750 (JCM16775_0981) - 1010944..1011330 (+) 387 WP_006804578.1 adhesion protein FadA -
  FVE77_RS04755 (JCM16775_0982) - 1011353..1011739 (+) 387 WP_006804577.1 hypothetical protein -
  FVE77_RS04760 (JCM16775_0983) - 1011815..1012381 (+) 567 WP_006804576.1 FAD-I family protein -
  FVE77_RS04765 (JCM16775_0984) - 1012436..1012645 (+) 210 WP_026746576.1 hypothetical protein -
  FVE77_RS04770 (JCM16775_0985) - 1012606..1013145 (+) 540 WP_026746575.1 OmpA family protein -
  FVE77_RS04775 (JCM16775_0987) - 1013312..1014571 (-) 1260 WP_232052963.1 sensor histidine kinase KdpD -
  FVE77_RS04780 (JCM16775_0988) scnR 1014702..1015406 (-) 705 WP_026746573.1 response regulator transcription factor Regulator
  FVE77_RS04785 (JCM16775_0989) - 1015605..1015949 (+) 345 WP_026746572.1 hypothetical protein -
  FVE77_RS04790 (JCM16775_0990) - 1016391..1019090 (+) 2700 WP_026746571.1 calcium-translocating P-type ATPase, PMCA-type -
  FVE77_RS04795 (JCM16775_0991) pcp 1019262..1019903 (-) 642 WP_026746570.1 pyroglutamyl-peptidase I -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26786.11 Da        Isoelectric Point: 5.0501

>NTDB_id=74298 FVE77_RS04780 WP_026746573.1 1014702..1015406(-) (scnR) [Leptotrichia hofstadii strain JCM16775]
MIEKYLTNKCILIVDDEQEILDMIVSIFADYGYKNIQTAKNVKDTMKCVAEKQPDLAILDVMLPDGNGFDLLEKLRKDSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEESPIVNLSGCQIDFSCGEIIKDNKNISLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEEK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=74298 FVE77_RS04780 WP_026746573.1 1014702..1015406(-) (scnR) [Leptotrichia hofstadii strain JCM16775]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAACAGGAAATTTTGGATATGATTGTATCAAT
TTTTGCTGATTATGGGTATAAAAATATACAGACTGCAAAAAATGTGAAAGATACTATGAAATGTGTTGCAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGACGGGAACGGTTTTGACTTACTGGAAAAGTTGAGAAAAGATAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAGGATGAGGATAAATTTAAGGGCTTTGGATTGGGGGCGGACGACTATAT
TGTGAAACCTTTTTTACCAAAAGAGCTTTTATTTAGAATTACTGCTATTTTACGGCGAACTTACAAAGAAGAAAGTCCGA
TTGTAAATTTGAGCGGTTGTCAAATTGACTTTTCCTGTGGAGAAATTATAAAAGATAATAAAAATATATCATTAACTGCA
AAGGAATATGAATTATTACAAACTCTTTACCGAAACGCTGGACGTATTGTAACTATTGATACACTGTGTGAAGCTGTATG
GGGTGAAAACGCCTATGTTTATACAAATTCTCTGATGACACATATAAGACGCATTAGAGAAAAAATTGAAATCAACCCTT
CCCATCCTGTATCACTAATAACAATGAAAGGGTTAGGTTATAAACTAATTGTGGAGGAAAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510KZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.673

95.299

0.483
  vicR Streptococcus mutans UA159

39.738

97.863

0.389
  micA Streptococcus pneumoniae Cp1015

37.391

98.291

0.368

Multiple sequence alignment