Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QDY55_RS00185 Genome accession   NZ_CP122768
Coordinates   36843..37433 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain ETEC1738     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 31843..42433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS00170 (QDY55_00170) ilvN 33150..33440 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  QDY55_RS00175 (QDY55_00175) - 33705..35000 (+) 1296 WP_064225446.1 hypothetical protein -
  QDY55_RS00180 (QDY55_00180) - 35254..36681 (+) 1428 WP_059327796.1 hypothetical protein -
  QDY55_RS00185 (QDY55_00185) letA 36843..37433 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QDY55_RS00190 (QDY55_00190) uhpB 37433..38935 (+) 1503 WP_064225445.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QDY55_RS00195 (QDY55_00195) uhpC 38945..40264 (+) 1320 WP_064225444.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QDY55_RS00200 (QDY55_00200) uhpT 40520..41911 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=742887 QDY55_RS00185 WP_000633668.1 36843..37433(+) (letA) [Escherichia coli strain ETEC1738]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=742887 QDY55_RS00185 WP_000633668.1 36843..37433(+) (letA) [Escherichia coli strain ETEC1738]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCACTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAACCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378