Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OIO62_RS15230 Genome accession   NZ_CP107616
Coordinates   3216956..3217366 (-) Length   136 a.a.
NCBI ID   WP_025464588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326932     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3211956..3222366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO62_RS15200 (OIO62_15200) - 3212042..3212311 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OIO62_RS15205 (OIO62_15205) rapZ 3212308..3213159 (-) 852 WP_000821671.1 RNase adapter RapZ -
  OIO62_RS15210 (OIO62_15210) panC 3213182..3214030 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  OIO62_RS15215 (OIO62_15215) panB 3214034..3214843 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OIO62_RS15220 (OIO62_15220) folK 3214889..3215371 (-) 483 WP_000219212.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OIO62_RS15225 (OIO62_15225) pcnB 3215368..3216831 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  OIO62_RS15230 (OIO62_15230) comEA 3216956..3217366 (-) 411 WP_025464588.1 ComEA family DNA-binding protein Machinery gene
  OIO62_RS15235 (OIO62_15235) mazG 3217335..3218141 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  OIO62_RS15240 (OIO62_15240) - 3218253..3219026 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  OIO62_RS15245 (OIO62_15245) - 3219071..3221377 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.93 Da        Isoelectric Point: 10.3828

>NTDB_id=741554 OIO62_RS15230 WP_025464588.1 3216956..3217366(-) (comEA) [Acinetobacter baumannii strain 1326932]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=741554 OIO62_RS15230 WP_025464588.1 3216956..3217366(-) (comEA) [Acinetobacter baumannii strain 1326932]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

98.529

100

0.985
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412