Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OIO47_RS01515 Genome accession   NZ_CP107614
Coordinates   325801..326541 (+) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326927-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320801..331541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO47_RS01500 (OIO47_01500) ponA 321388..323943 (-) 2556 WP_031965088.1 penicillin-binding protein PBP1a -
  OIO47_RS01505 (OIO47_01505) pilM 324105..325163 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  OIO47_RS01510 (OIO47_01510) pilN 325163..325804 (+) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  OIO47_RS01515 (OIO47_01515) pilO 325801..326541 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO47_RS01520 (OIO47_01520) pilP 326552..327079 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO47_RS01525 (OIO47_01525) - 327142..329307 (+) 2166 Protein_290 type IV pilus secretin PilQ -
  OIO47_RS01530 (OIO47_01530) aroK 329319..329888 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OIO47_RS01535 (OIO47_01535) aroB 329917..330999 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=741489 OIO47_RS01515 WP_000076106.1 325801..326541(+) (pilO) [Acinetobacter baumannii strain 1326927-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=741489 OIO47_RS01515 WP_000076106.1 325801..326541(+) (pilO) [Acinetobacter baumannii strain 1326927-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679