Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OIO47_RS01520 Genome accession   NZ_CP107614
Coordinates   326552..327079 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 1326927-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321552..332079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO47_RS01505 (OIO47_01505) pilM 324105..325163 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  OIO47_RS01510 (OIO47_01510) pilN 325163..325804 (+) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  OIO47_RS01515 (OIO47_01515) pilO 325801..326541 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO47_RS01520 (OIO47_01520) pilP 326552..327079 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO47_RS01525 (OIO47_01525) - 327142..329307 (+) 2166 Protein_290 type IV pilus secretin PilQ -
  OIO47_RS01530 (OIO47_01530) aroK 329319..329888 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OIO47_RS01535 (OIO47_01535) aroB 329917..330999 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OIO47_RS01540 (OIO47_01540) - 331015..331890 (+) 876 WP_031961395.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=741490 OIO47_RS01520 WP_000695065.1 326552..327079(+) (pilP) [Acinetobacter baumannii strain 1326927-2]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=741490 OIO47_RS01520 WP_000695065.1 326552..327079(+) (pilP) [Acinetobacter baumannii strain 1326927-2]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714