Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VroAM7_RS14950 Genome accession   NZ_AP019798
Coordinates   3174024..3174656 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio rotiferianus strain AM7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169024..3179656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS14930 (VroAM7_27800) - 3170549..3171028 (+) 480 WP_010443967.1 TIGR02444 family protein -
  VroAM7_RS14935 (VroAM7_27810) - 3171508..3172515 (+) 1008 WP_143693027.1 hydrolase -
  VroAM7_RS14940 (VroAM7_27820) - 3172578..3172787 (+) 210 WP_010443970.1 YheU family protein -
  VroAM7_RS14945 (VroAM7_27830) - 3172915..3173784 (+) 870 WP_010443971.1 phosphoribulokinase -
  VroAM7_RS14950 (VroAM7_27840) crp 3174024..3174656 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  VroAM7_RS14955 (VroAM7_27850) - 3174866..3175657 (-) 792 WP_143693028.1 DUF1338 domain-containing protein -
  VroAM7_RS14960 (VroAM7_27860) astD 3175922..3177379 (-) 1458 WP_138942287.1 succinylglutamate-semialdehyde dehydrogenase -
  VroAM7_RS14965 (VroAM7_27870) astA 3177408..3178427 (-) 1020 WP_010443978.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=74145 VroAM7_RS14950 WP_005381432.1 3174024..3174656(+) (crp) [Vibrio rotiferianus strain AM7]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=74145 VroAM7_RS14950 WP_005381432.1 3174024..3174656(+) (crp) [Vibrio rotiferianus strain AM7]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment