Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OIO43_RS12250 Genome accession   NZ_CP107599
Coordinates   2584224..2584931 (+) Length   235 a.a.
NCBI ID   WP_000203220.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   regulate competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2582062..2608686 2584224..2584931 within 0


Gene organization within MGE regions


Location: 2582062..2608686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS12235 (OIO43_12235) - 2582842..2583267 (-) 426 WP_001026229.1 GNAT family N-acetyltransferase -
  OIO43_RS12240 (OIO43_12240) - 2583362..2583784 (-) 423 WP_001195082.1 OsmC family protein -
  OIO43_RS12245 (OIO43_12245) - 2583863..2583982 (-) 120 Protein_2390 hypothetical protein -
  OIO43_RS12250 (OIO43_12250) crp 2584224..2584931 (+) 708 WP_000203220.1 cAMP-activated global transcriptional regulator CRP Regulator
  OIO43_RS12255 (OIO43_12255) - 2585092..2586141 (+) 1050 WP_001159805.1 NADP(H)-dependent aldo-keto reductase -
  OIO43_RS12260 (OIO43_12260) - 2586200..2586979 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  OIO43_RS12265 (OIO43_12265) - 2587096..2587413 (-) 318 WP_000776215.1 hypothetical protein -
  OIO43_RS12270 (OIO43_12270) - 2587535..2588854 (-) 1320 WP_000517794.1 adenylosuccinate synthase -
  OIO43_RS12275 (OIO43_12275) - 2588919..2590085 (-) 1167 WP_000155682.1 ATP phosphoribosyltransferase regulatory subunit -
  OIO43_RS12280 (OIO43_12280) - 2590361..2591386 (-) 1026 WP_001188830.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  OIO43_RS12285 (OIO43_12285) alaS 2591656..2594292 (+) 2637 WP_000199458.1 alanine--tRNA ligase -
  OIO43_RS12290 (OIO43_12290) - 2594579..2595784 (+) 1206 WP_001229153.1 site-specific integrase -
  OIO43_RS19000 - 2595933..2596142 (-) 210 Protein_2400 transposase family protein -
  OIO43_RS12295 (OIO43_12295) - 2596233..2597261 (-) 1029 WP_000060571.1 spore coat U domain-containing protein -
  OIO43_RS12300 (OIO43_12300) - 2597252..2599705 (-) 2454 WP_001269069.1 fimbria/pilus outer membrane usher protein -
  OIO43_RS12305 (OIO43_12305) - 2599715..2600422 (-) 708 WP_001230661.1 molecular chaperone -
  OIO43_RS12310 (OIO43_12310) - 2600504..2601034 (-) 531 WP_001043252.1 spore coat U domain-containing protein -
  OIO43_RS12315 (OIO43_12315) - 2601708..2602253 (-) 546 WP_001019743.1 glycoside hydrolase family 108 protein -
  OIO43_RS12320 (OIO43_12320) - 2602296..2602685 (-) 390 WP_000433896.1 hypothetical protein -
  OIO43_RS12325 (OIO43_12325) - 2602751..2603311 (-) 561 WP_000970244.1 DUF4376 domain-containing protein -
  OIO43_RS12330 (OIO43_12330) - 2603308..2607708 (-) 4401 WP_000994931.1 host specificity protein J -
  OIO43_RS12335 (OIO43_12335) - 2607765..2608430 (-) 666 WP_000920728.1 tail assembly protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26597.21 Da        Isoelectric Point: 4.6625

>NTDB_id=741224 OIO43_RS12250 WP_000203220.1 2584224..2584931(+) (crp) [Acinetobacter baumannii strain 1326584]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRITRCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=741224 OIO43_RS12250 WP_000203220.1 2584224..2584931(+) (crp) [Acinetobacter baumannii strain 1326584]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTACGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTTTGATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

46.86

88.085

0.413
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396