Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OIO78_RS15950 Genome accession   NZ_CP107597
Coordinates   3298916..3299326 (-) Length   136 a.a.
NCBI ID   WP_031959727.1    Uniprot ID   A0AAD2YQC0
Organism   Acinetobacter baumannii strain 1326581-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3293916..3304326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO78_RS15920 (OIO78_15925) - 3294002..3294271 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OIO78_RS15925 (OIO78_15930) rapZ 3294268..3295119 (-) 852 WP_000821671.1 RNase adapter RapZ -
  OIO78_RS15930 (OIO78_15935) panC 3295142..3295990 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  OIO78_RS15935 (OIO78_15940) panB 3295994..3296803 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OIO78_RS15940 (OIO78_15945) folK 3296849..3297331 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OIO78_RS15945 (OIO78_15950) pcnB 3297328..3298791 (-) 1464 WP_031959729.1 polynucleotide adenylyltransferase PcnB -
  OIO78_RS15950 (OIO78_15955) comEA 3298916..3299326 (-) 411 WP_031959727.1 ComEA family DNA-binding protein Machinery gene
  OIO78_RS15955 (OIO78_15960) mazG 3299295..3300101 (-) 807 WP_031959726.1 nucleoside triphosphate pyrophosphohydrolase -
  OIO78_RS15960 (OIO78_15965) - 3300213..3300986 (+) 774 WP_024433150.1 SDR family oxidoreductase -
  OIO78_RS15965 (OIO78_15970) - 3301031..3303337 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15761.12 Da        Isoelectric Point: 10.4475

>NTDB_id=741182 OIO78_RS15950 WP_031959727.1 3298916..3299326(-) (comEA) [Acinetobacter baumannii strain 1326581-2]
MQYSMRFWKNKYFLLIMLCLGVISPSIYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=741182 OIO78_RS15950 WP_031959727.1 3298916..3299326(-) (comEA) [Acinetobacter baumannii strain 1326581-2]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412