Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VroAM7_RS05355 Genome accession   NZ_AP019798
Coordinates   1136599..1138854 (+) Length   751 a.a.
NCBI ID   WP_143692262.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131599..1143854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS05330 (VroAM7_09870) - 1131890..1132459 (-) 570 WP_010447134.1 PilZ domain-containing protein -
  VroAM7_RS05335 (VroAM7_09880) lolC 1132726..1133934 (+) 1209 WP_172622529.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VroAM7_RS05340 (VroAM7_09890) lolD 1133927..1134634 (+) 708 WP_010447138.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VroAM7_RS05345 (VroAM7_09900) lolE 1134637..1135881 (+) 1245 WP_010447140.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VroAM7_RS05350 (VroAM7_09910) - 1136081..1136590 (-) 510 WP_010447143.1 DUF2062 domain-containing protein -
  VroAM7_RS05355 comEC 1136599..1138854 (+) 2256 WP_143692262.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VroAM7_RS05360 (VroAM7_09930) msbA 1138886..1140634 (+) 1749 WP_138942215.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VroAM7_RS05365 (VroAM7_09940) lpxK 1140640..1141647 (+) 1008 WP_138942216.1 tetraacyldisaccharide 4'-kinase -
  VroAM7_RS05370 (VroAM7_09950) - 1141628..1141807 (+) 180 WP_005378451.1 Trm112 family protein -
  VroAM7_RS05375 (VroAM7_09960) kdsB 1141807..1142565 (+) 759 WP_143692263.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84609.25 Da        Isoelectric Point: 8.6625

>NTDB_id=74117 VroAM7_RS05355 WP_143692262.1 1136599..1138854(+) (comEC) [Vibrio rotiferianus strain AM7]
MTLSEKSLALALFVASVFSSAWWPMMPSWHWLLLGIFAVGSIIKLRRGLMCIGVIWGCMVVIAHGNVMEQQKQALFKAGM
NITINGKVDSPFTQISHGYEGIVVVSHVNSQSLLPFFKPKVRLITSIPLGVNSEIKAEVELKPITGLKNEVGFDSENFSL
SQGIVARATSMKDSRWIVRSKSALRQTLIARINASIAGLYNEPLIRALSYSDRSLLTPDLWKSLRDSGLIHLVSISGLHI
GMALSFGCFLGFLFRLAIPWANHLPYIFGLVFAVAYSWLADFSLPTVRALSVCAIYLFLKYHKLHWPSWRILLLAISGQL
LVEPFSFLGSSFWLSYLSVVAVLVVLNIVWMNQYSWLNILKHIIAVQLALSLFILPISGYFFSGFSAVSPLFNLIFIPWF
SLVVVPMIFIALLFTCLTADAFSWIWIFVDGVLWPLNWALGLAEETWFAVSDDSLILITLILFCSFGLRFLTVNSILLII
GIATLCLVFPFKQYYWRVDVLDVGHGLSVLLEKDGKALLYDTGKSWSGGSIAERVISPILHSKGHSQIDALILSHLDDDH
AGGRRFLEENFEPNDKFSSQLLPDYLPCIEGEAWYWQGVKFEAIWPPKLVRRAFNPHSCVIRVVDPVSNFRILLTGDIEA
ISEWILIRRPELLDSDIVIVPHHGSKSSSNPKFIEAINPQIAIASLAKNNRWGIPSPSVQQAYTSLGTSWFDTGESGQVS
IYVWRDFWRLKTQRNKMFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=74117 VroAM7_RS05355 WP_143692262.1 1136599..1138854(+) (comEC) [Vibrio rotiferianus strain AM7]
ATGACTCTCTCAGAAAAAAGTTTGGCCTTGGCGTTATTTGTAGCAAGCGTTTTTTCATCTGCCTGGTGGCCGATGATGCC
GAGTTGGCATTGGTTGCTGCTGGGTATTTTTGCCGTTGGCTCAATAATCAAACTACGTCGAGGCTTAATGTGCATTGGCG
TAATTTGGGGCTGTATGGTGGTTATTGCCCATGGCAATGTCATGGAACAACAAAAACAAGCCCTGTTTAAAGCAGGGATG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTCGTTGTTAGCCA
CGTAAATTCTCAATCTCTCTTACCATTTTTTAAACCAAAAGTTCGGTTGATAACCTCAATTCCACTTGGTGTTAACAGTG
AAATTAAGGCGGAAGTAGAGTTAAAGCCGATTACGGGCTTAAAAAACGAGGTTGGTTTTGATTCAGAAAACTTTTCTTTA
AGTCAGGGTATTGTGGCAAGAGCGACTTCGATGAAAGACAGTCGCTGGATTGTTCGCTCAAAAAGCGCTCTCAGACAAAC
ACTCATCGCGCGTATTAACGCCAGTATTGCAGGTTTATATAATGAACCTTTAATAAGAGCGCTGAGTTACAGCGATCGCT
CATTACTTACTCCCGACTTATGGAAAAGCTTGCGAGACAGTGGACTTATTCATCTAGTATCCATTTCTGGTTTACACATT
GGCATGGCGCTCTCATTTGGCTGTTTTCTTGGCTTTTTGTTTCGTCTTGCAATTCCGTGGGCTAATCATTTGCCCTACAT
CTTTGGGCTAGTTTTCGCTGTTGCTTATTCTTGGCTTGCTGATTTTTCGTTGCCAACTGTGCGCGCCCTAAGTGTATGCG
CGATCTATTTGTTTCTTAAGTACCATAAACTGCATTGGCCAAGTTGGAGGATTTTACTGCTCGCCATTAGTGGGCAACTT
TTAGTCGAGCCGTTTTCTTTCCTAGGTAGCAGTTTTTGGTTGTCTTACTTATCGGTAGTTGCGGTGCTTGTTGTACTTAA
TATTGTTTGGATGAACCAATATAGTTGGCTTAACATTTTGAAGCATATCATCGCAGTTCAACTTGCTCTGTCGCTGTTCA
TTTTGCCAATTAGCGGCTACTTTTTTTCAGGTTTTAGCGCAGTATCTCCCCTTTTTAATCTGATTTTTATCCCTTGGTTT
AGCCTGGTTGTGGTTCCTATGATATTTATAGCGCTACTTTTCACCTGCTTGACCGCAGATGCTTTTAGTTGGATATGGAT
ATTCGTCGATGGTGTACTTTGGCCTCTAAATTGGGCGTTAGGATTGGCTGAGGAAACTTGGTTTGCTGTTAGTGATGACT
CACTTATTCTTATAACGTTGATATTGTTTTGCTCATTTGGGCTTCGTTTTCTTACTGTAAATAGCATCCTACTCATCATC
GGTATTGCCACGCTCTGTCTCGTCTTTCCCTTTAAACAGTACTATTGGCGTGTTGATGTTTTAGATGTGGGCCATGGTCT
ATCAGTGTTGCTTGAGAAAGACGGTAAGGCATTGCTCTATGATACGGGGAAATCATGGAGTGGGGGGAGCATTGCTGAAA
GAGTTATCTCGCCTATCCTACATTCAAAAGGGCATTCTCAAATTGACGCTTTGATCCTAAGTCATTTGGATGATGACCAC
GCAGGAGGAAGGAGGTTCTTAGAAGAGAATTTTGAACCTAATGATAAGTTCAGTAGTCAGCTTCTGCCGGATTATCTTCC
TTGTATCGAGGGCGAAGCCTGGTATTGGCAAGGGGTGAAGTTTGAAGCAATCTGGCCACCTAAATTAGTAAGGCGTGCTT
TTAACCCTCACTCGTGCGTCATTAGGGTCGTTGATCCTGTTTCTAACTTTCGAATTTTACTAACCGGAGATATTGAGGCC
ATTAGTGAATGGATTTTAATCAGACGACCAGAACTCTTAGATAGTGATATCGTGATTGTCCCCCACCATGGCAGTAAAAG
CTCTTCTAATCCCAAGTTTATTGAAGCAATAAACCCTCAAATAGCCATCGCTTCTTTGGCTAAAAATAATCGGTGGGGGA
TACCATCCCCATCTGTACAGCAGGCCTACACGTCTTTGGGCACATCATGGTTTGATACTGGAGAATCTGGGCAGGTGAGT
ATTTATGTATGGCGGGATTTTTGGCGATTAAAAACGCAACGTAACAAGATGTTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(209-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

58.644

100

0.587
  comEC Vibrio parahaemolyticus RIMD 2210633

56.574

100

0.567
  comEC Vibrio cholerae strain A1552

40.716

100

0.409

Multiple sequence alignment