Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OIO74_RS12275 Genome accession   NZ_CP107593
Coordinates   2582041..2582748 (+) Length   235 a.a.
NCBI ID   WP_000203220.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326580     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577041..2587748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO74_RS12255 (OIO74_12255) - 2579856..2580662 (+) 807 WP_001237343.1 peptidoglycan DD-metalloendopeptidase family protein -
  OIO74_RS12260 (OIO74_12260) - 2580659..2581084 (-) 426 WP_001026229.1 GNAT family N-acetyltransferase -
  OIO74_RS12265 (OIO74_12265) - 2581179..2581601 (-) 423 WP_001195082.1 OsmC family protein -
  OIO74_RS12270 (OIO74_12270) - 2581680..2581799 (-) 120 Protein_2399 hypothetical protein -
  OIO74_RS12275 (OIO74_12275) crp 2582041..2582748 (+) 708 WP_000203220.1 cAMP-activated global transcriptional regulator CRP Regulator
  OIO74_RS12280 (OIO74_12280) - 2582909..2583958 (+) 1050 WP_001159805.1 NADP(H)-dependent aldo-keto reductase -
  OIO74_RS12285 (OIO74_12285) - 2584017..2584796 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  OIO74_RS12290 (OIO74_12290) - 2584913..2585230 (-) 318 WP_000776215.1 hypothetical protein -
  OIO74_RS12295 (OIO74_12295) - 2585352..2586671 (-) 1320 WP_000517794.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26597.21 Da        Isoelectric Point: 4.6625

>NTDB_id=741100 OIO74_RS12275 WP_000203220.1 2582041..2582748(+) (crp) [Acinetobacter baumannii strain 1326580]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRITRCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=741100 OIO74_RS12275 WP_000203220.1 2582041..2582748(+) (crp) [Acinetobacter baumannii strain 1326580]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTACGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTTTGATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

46.86

88.085

0.413
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396