Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   OIO74_RS04585 Genome accession   NZ_CP107593
Coordinates   957454..959886 (+) Length   810 a.a.
NCBI ID   WP_000472720.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326580     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 956683..973711 957454..959886 within 0


Gene organization within MGE regions


Location: 956683..973711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO74_RS04580 (OIO74_04580) lolD 956683..957369 (+) 687 WP_000049406.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OIO74_RS04585 (OIO74_04585) comA/comEC 957454..959886 (+) 2433 WP_000472720.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OIO74_RS04590 (OIO74_04590) - 959839..960822 (-) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  OIO74_RS04595 (OIO74_04595) sppA 960959..961975 (+) 1017 WP_001286612.1 signal peptide peptidase SppA -
  OIO74_RS04600 (OIO74_04600) - 961994..962803 (+) 810 WP_000114071.1 alpha/beta fold hydrolase -
  OIO74_RS04605 (OIO74_04605) purN 962867..963496 (-) 630 WP_000975532.1 phosphoribosylglycinamide formyltransferase -
  OIO74_RS04610 (OIO74_04610) purM 963493..964563 (-) 1071 WP_000071983.1 phosphoribosylformylglycinamidine cyclo-ligase -
  OIO74_RS04615 (OIO74_04615) cxpE 964699..965892 (+) 1194 WP_001153981.1 chloramphenicol efflux transporter CxpE -
  OIO74_RS04620 (OIO74_04620) hda 965913..966611 (+) 699 WP_001249535.1 DnaA regulatory inactivator Hda -
  OIO74_RS04625 (OIO74_04625) rbtA 966929..968782 (+) 1854 WP_000920030.1 rhombotarget A -
  OIO74_RS04630 (OIO74_04630) - 968798..970168 (+) 1371 Protein_886 CSLREA domain-containing protein -
  OIO74_RS04635 (OIO74_04635) - 970175..971143 (-) 969 WP_005804963.1 IS30 family transposase -
  OIO74_RS04640 (OIO74_04640) - 971256..972317 (+) 1062 Protein_888 CSLREA domain-containing protein -
  OIO74_RS04645 (OIO74_04645) - 972408..972797 (-) 390 WP_000225917.1 DUF3106 domain-containing protein -
  OIO74_RS04650 (OIO74_04650) - 972787..973107 (-) 321 WP_001015075.1 hypothetical protein -
  OIO74_RS04655 (OIO74_04655) - 973097..973711 (-) 615 WP_000362312.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92436.79 Da        Isoelectric Point: 8.6678

>NTDB_id=741093 OIO74_RS04585 WP_000472720.1 957454..959886(+) (comA/comEC) [Acinetobacter baumannii strain 1326580]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYYYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNLSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKIRLTFRQILNSSSIQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMAVPCCLGVLIYTA
FVGFEIPALRTLLSALIFIGFLLLKQPIKPFTLLVYSASLLLLMDPFSVLSAGFWLSYGACFILIRIYQTIAQLPEQHFL
SLSSKMIFMSKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIMAACAWFVIKPFGNMLFHFND
MLLSILLSCLGLLEKLSLTLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHPQQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPLIQQEIPVKQLISNEQLPND
LKQPFQYCYQGQQWHYPELDIQILWPKEKDLAFVASNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTVEQGTLSFVLENHKIVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=741093 OIO74_RS04585 WP_000472720.1 957454..959886(+) (comA/comEC) [Acinetobacter baumannii strain 1326580]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGCCCCATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACTACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACAGATACCCGAAATCTCGACATTATTGTTTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATCTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCACATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAGTGGTTTATTCAGCGAAATATTATGTCTGGTTTTAACGTGAGATATAT
TGAGCCTTTAAGCCTTGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAAATTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTATACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTATTTATGGAAACCGAAACAGGTTTTGATGGCTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGCCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGTGCAAGTCTACTGTTGCTAATGGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGTTTTATTTTAATAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGAGTAAGGTGTTAATTGAATCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGGGGTGTTA
TTGTCCCTTTAAACATCATGGCTGCTTGCGCATGGTTTGTAATAAAACCATTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTAACATTACAAGGTATAAGCTTGACACC
ACTGTCTTTATTAGCGATTAGTTGTGCCATTATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGAATAT
TATGTTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGGCAGGGGCAG
GCTATTTTTCTACAACATCCCCAACAAAACTGGTTAATTGACACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAACTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTCTTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCTATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTGCTTCTAATCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCTGGATGGGAAGCTGAGTACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTAGTGCTAGGGCATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTACATA
TTCCGCTAAAAAGCACTGTGGAACAAGGGACCTTAAGTTTTGTGTTGGAAAATCACAAAATAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Competence protein (Competence)

(243-522)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

98.519

100

0.985
  comA/comEC Acinetobacter baumannii strain A118

97.531

100

0.975
  comA/comEC Acinetobacter baylyi ADP1

50.062

100

0.501