Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QCM40_RS06415 Genome accession   NZ_CP122516
Coordinates   1317595..1318146 (-) Length   183 a.a.
NCBI ID   WP_140501467.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312595..1323146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS06390 (QCM40_06390) ruvC 1313860..1314333 (-) 474 WP_001221149.1 crossover junction endodeoxyribonuclease RuvC -
  QCM40_RS06395 (QCM40_06395) - 1314464..1315195 (+) 732 WP_000646770.1 NYN domain-containing protein -
  QCM40_RS06400 (QCM40_06400) - 1315516..1315659 (-) 144 WP_000592537.1 hypothetical protein -
  QCM40_RS06405 (QCM40_06405) - 1316187..1316336 (-) 150 WP_238698565.1 hypothetical protein -
  QCM40_RS06410 (QCM40_06410) - 1316744..1317355 (-) 612 Protein_1263 DUF3519 domain-containing protein -
  QCM40_RS06415 (QCM40_06415) ruvA 1317595..1318146 (-) 552 WP_140501467.1 Holliday junction branch migration protein RuvA Machinery gene
  QCM40_RS06420 (QCM40_06420) - 1318171..1320015 (-) 1845 WP_279954757.1 hypothetical protein -
  QCM40_RS06425 (QCM40_06425) murJ 1320108..1321568 (+) 1461 WP_279954759.1 murein biosynthesis integral membrane protein MurJ -
  QCM40_RS06430 (QCM40_06430) cysS 1321569..1322966 (+) 1398 WP_279954760.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20181.76 Da        Isoelectric Point: 8.4749

>NTDB_id=741009 QCM40_RS06415 WP_140501467.1 1317595..1318146(-) (ruvA) [Helicobacter pylori strain HP34]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSTEINQV
LKTLKPNLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=741009 QCM40_RS06415 WP_140501467.1 1317595..1318146(-) (ruvA) [Helicobacter pylori strain HP34]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAACGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATCAAAG
AAGACGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAACGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAACCAAGTC
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

95.628

100

0.956
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361