Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QC809_RS00175 Genome accession   NZ_CP122499
Coordinates   33002..33592 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain W409     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 28002..38592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC809_RS00140 yidF 28119..28616 (+) 498 WP_000148061.1 radical SAM protein -
  QC809_RS00145 emrD 28624..29808 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  QC809_RS00150 ysdE 29890..29964 (+) 75 WP_211180519.1 protein YsdE -
  QC809_RS00155 tisB 30088..30177 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  QC809_RS00160 ivbL 30742..30840 (+) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  QC809_RS00165 ilvB 30946..32634 (+) 1689 WP_061348785.1 acetolactate synthase large subunit -
  QC809_RS00170 ilvN 32638..32928 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  QC809_RS00175 letA 33002..33592 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QC809_RS00180 uhpB 33592..35094 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QC809_RS00185 uhpC 35104..36423 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QC809_RS00190 uhpT 36561..37952 (+) 1392 WP_063084832.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=740693 QC809_RS00175 WP_000633668.1 33002..33592(+) (letA) [Escherichia coli strain W409]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=740693 QC809_RS00175 WP_000633668.1 33002..33592(+) (letA) [Escherichia coli strain W409]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378