Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAY59_RS05460 Genome accession   NZ_CP122487
Coordinates   1109115..1109717 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain IT-MRSA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104115..1114717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY59_RS05440 (QAY59_05430) yajC 1105611..1105871 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QAY59_RS05445 (QAY59_05435) tgt 1105890..1107029 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAY59_RS05450 (QAY59_05440) queA 1107052..1108077 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAY59_RS05455 (QAY59_05445) ruvB 1108079..1109083 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAY59_RS05460 (QAY59_05450) ruvA 1109115..1109717 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  QAY59_RS05465 (QAY59_05455) - 1109731..1110186 (-) 456 WP_000368902.1 ACT domain-containing protein -
  QAY59_RS05470 (QAY59_05460) obgE 1110199..1111491 (-) 1293 WP_000496100.1 GTPase ObgE -
  QAY59_RS05475 (QAY59_05465) rpmA 1111976..1112260 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAY59_RS05480 (QAY59_05470) - 1112272..1112592 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAY59_RS05485 (QAY59_05475) rplU 1112598..1112906 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAY59_RS05490 (QAY59_05480) mreD 1113142..1113672 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  QAY59_RS05495 (QAY59_05485) mreC 1113672..1114514 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=740145 QAY59_RS05460 WP_000271550.1 1109115..1109717(-) (ruvA) [Staphylococcus aureus strain IT-MRSA45]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=740145 QAY59_RS05460 WP_000271550.1 1109115..1109717(-) (ruvA) [Staphylococcus aureus strain IT-MRSA45]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43