Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K5658_RS02980 Genome accession   NZ_AP019783
Coordinates   677959..679314 (-) Length   451 a.a.
NCBI ID   WP_221065511.1    Uniprot ID   -
Organism   Methylomagnum ishizawai strain RS11D-Pr     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 672959..684314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5658_RS02945 (MishRS11D_05860) gshB 673362..674318 (-) 957 WP_221065504.1 glutathione synthase -
  K5658_RS02950 (MishRS11D_05870) rpmB 674430..674666 (+) 237 WP_221065505.1 50S ribosomal protein L28 -
  K5658_RS02955 (MishRS11D_05880) rpmG 674686..674841 (+) 156 WP_221065506.1 50S ribosomal protein L33 -
  K5658_RS02960 (MishRS11D_05890) - 674857..675051 (+) 195 WP_221065507.1 YbdD/YjiX family protein -
  K5658_RS02965 (MishRS11D_05900) - 675094..675354 (-) 261 WP_221065508.1 hypothetical protein -
  K5658_RS02970 (MishRS11D_05910) msbA 675451..677220 (+) 1770 WP_221065509.1 lipid A export permease/ATP-binding protein MsbA -
  K5658_RS02975 (MishRS11D_05920) - 677379..677888 (+) 510 WP_221065510.1 hypothetical protein -
  K5658_RS02980 (MishRS11D_05930) pilR 677959..679314 (-) 1356 WP_221065511.1 sigma-54 dependent transcriptional regulator Regulator
  K5658_RS02985 (MishRS11D_05940) - 679311..680933 (-) 1623 WP_221065512.1 ATP-binding protein -
  K5658_RS02990 (MishRS11D_05950) - 681143..682144 (+) 1002 WP_221065513.1 TraB/GumN family protein -
  K5658_RS02995 (MishRS11D_05960) - 682181..684049 (-) 1869 WP_221065514.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49630.30 Da        Isoelectric Point: 6.2617

>NTDB_id=74001 K5658_RS02980 WP_221065511.1 677959..679314(-) (pilR) [Methylomagnum ishizawai strain RS11D-Pr]
MNKSTALVIDDEPAIRELLEMTLERMDIDVRAVGSLAQAKQSLQSGSFDICLTDMKLPDGNGLDLVEYIQAHCPALPVAV
ITAHGSMEAAIRAMKSGAFDFVSKPLDLGVLRNLVHTALKLRGQPRERRSRQVLLGESEAMREIRAKIAKLGRSQAPVFV
SGESGTGKELVARLIHAMSPRADQPFVPVNCGAIPEELMESEFFGHKKGSFTGAVADKQGLFQAANGGSLFLDEVADLPL
SLQVKLLRAIQEKSVRPVGEAKEIQVDTRIISATHKNLAKLVEEGAFRQDLFYRINVIGVHVPSLRERRGDIPILVDHVL
DKLAAINHEPRAQLAPEALDALMGYRFPGNVRELENILERAVALCEDWRIMVGDLDLPESLSSRPAPGGEDAPSPPLPEE
GVSLENYMDEIEKQAIIRALEKTRWNRTAAAKLLGITFRALRYKLKKLDLE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=74001 K5658_RS02980 WP_221065511.1 677959..679314(-) (pilR) [Methylomagnum ishizawai strain RS11D-Pr]
ATGAACAAATCGACCGCCCTAGTCATCGACGACGAACCCGCCATCCGCGAACTTTTGGAAATGACCCTCGAACGCATGGA
TATCGATGTCCGCGCGGTGGGCAGCCTGGCCCAGGCCAAGCAATCCTTGCAGTCCGGGAGCTTCGACATCTGCCTCACCG
ATATGAAGCTGCCCGACGGCAACGGCCTGGACCTGGTCGAATATATCCAGGCCCATTGCCCGGCCCTGCCGGTGGCGGTC
ATCACCGCCCATGGCAGCATGGAAGCCGCCATCCGCGCCATGAAAAGCGGTGCCTTCGATTTCGTCAGCAAGCCCCTGGA
CCTCGGGGTATTGCGCAACCTGGTCCATACCGCGCTCAAGCTGCGCGGCCAACCCCGCGAGCGCCGCTCGCGCCAGGTCC
TGCTGGGCGAATCCGAGGCCATGCGCGAGATCCGCGCCAAGATCGCCAAGCTCGGGCGCAGCCAGGCCCCGGTGTTCGTC
AGCGGCGAATCCGGCACCGGCAAGGAATTGGTGGCCCGCCTGATCCACGCCATGAGCCCCCGCGCCGACCAGCCCTTCGT
GCCGGTCAACTGCGGGGCCATCCCCGAGGAACTGATGGAGAGCGAATTCTTCGGCCATAAGAAAGGCAGTTTCACCGGCG
CGGTGGCGGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCAGCCTGTTCCTGGACGAGGTGGCCGATTTGCCCCTG
AGCCTGCAAGTCAAGCTGTTGCGGGCCATCCAGGAAAAATCCGTGCGCCCGGTGGGCGAGGCCAAGGAAATCCAGGTCGA
TACCCGCATCATCAGCGCGACCCACAAGAACCTGGCGAAACTGGTGGAGGAAGGCGCGTTCCGGCAGGATTTGTTCTACC
GCATCAACGTGATCGGGGTGCATGTGCCCTCCCTGCGGGAACGGCGCGGCGATATCCCCATCCTGGTCGACCATGTCCTC
GACAAGCTGGCCGCCATCAACCACGAACCCCGCGCCCAATTGGCCCCCGAGGCGCTCGACGCCCTGATGGGCTACCGCTT
CCCCGGCAATGTGCGCGAATTGGAGAACATCCTGGAACGGGCCGTGGCCCTGTGCGAGGACTGGCGCATCATGGTGGGCG
ATTTGGACCTGCCGGAAAGCCTGTCCAGCCGCCCCGCGCCGGGCGGGGAGGACGCCCCGTCCCCGCCCCTGCCGGAAGAA
GGCGTCTCGCTGGAAAACTATATGGACGAAATCGAAAAACAGGCCATCATCCGCGCCCTGGAGAAAACCCGCTGGAACCG
GACGGCGGCGGCGAAACTCCTGGGAATCACCTTCCGCGCCCTGCGCTATAAACTGAAGAAACTGGATTTGGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(134-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.177

100

0.603
  pilR Acinetobacter baumannii strain A118

50.435

100

0.514
  luxO Vibrio cholerae strain A1552

37.416

99.557

0.373

Multiple sequence alignment