Detailed information NTG0074001

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: K6J91_RS06110
• Genome accession: NZ_AP024624
• Coordinates: 1188314..1189231 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis strain BEST3106
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1183314..1194231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J91_RS06095 (BsBEST3106_11280)	trpS	1183894..1184886 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
K6J91_RS06100 (BsBEST3106_11290)	oppA	1185630..1187267 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
K6J91_RS06105 (BsBEST3106_11300)	oppB	1187375..1188310 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
K6J91_RS06110 (BsBEST3106_11310)	amiD	1188314..1189231 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
K6J91_RS06115 (BsBEST3106_11320)	oppD	1189236..1190312 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
K6J91_RS06120 (BsBEST3106_11330)	oppF	1190314..1191231 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
K6J91_RS06125 (BsBEST3106_11340)	yjbB	1191338..1192555 (+)	1218	WP_010886478.1	MFS transporter	-
K6J91_RS06130 (BsBEST3106_11350)	yjbC	1192720..1193298 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
K6J91_RS06135 (BsBEST3106_11360)	spx	1193479..1193874 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=74001 K6J91_RS06110 WP_003232954.1 1188314..1189231(+) (amiD) [Bacillus subtilis strain BEST3106]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=74001 K6J91_RS06110 WP_003232954.1 1188314..1189231(+) (amiD) [Bacillus subtilis strain BEST3106]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364