Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K5607_RS05825 Genome accession   NZ_AP019782
Coordinates   1207822..1209198 (-) Length   458 a.a.
NCBI ID   WP_221048486.1    Uniprot ID   A0A8D4VNX3
Organism   Methylogaea oryzae strain E10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202822..1214198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS05800 (MoryE10_11330) - 1203005..1203565 (-) 561 WP_221048482.1 TIR domain-containing protein -
  K5607_RS05805 (MoryE10_11340) creC 1203944..1205371 (-) 1428 WP_221048483.1 two-component system sensor histidine kinase CreC -
  K5607_RS05810 (MoryE10_11350) creB 1205368..1206054 (-) 687 WP_054774981.1 two-component system response regulator CreB -
  K5607_RS05815 (MoryE10_11360) - 1206065..1207150 (-) 1086 WP_221048484.1 DUF5685 family protein -
  K5607_RS05820 (MoryE10_11370) bluB 1207156..1207818 (-) 663 WP_221048485.1 5,6-dimethylbenzimidazole synthase -
  K5607_RS05825 (MoryE10_11380) pilR 1207822..1209198 (-) 1377 WP_221048486.1 sigma-54 dependent transcriptional regulator Regulator
  K5607_RS05830 (MoryE10_11390) - 1209232..1210911 (-) 1680 WP_221048487.1 ATP-binding protein -
  K5607_RS05835 (MoryE10_11400) - 1211004..1212629 (+) 1626 WP_221048488.1 NAD+ synthase -
  K5607_RS05840 (MoryE10_11410) - 1212687..1213244 (-) 558 WP_054774240.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49777.11 Da        Isoelectric Point: 6.5680

>NTDB_id=73975 K5607_RS05825 WP_221048486.1 1207822..1209198(-) (pilR) [Methylogaea oryzae strain E10]
MQNETAQVLVVDDEPDIRELIALTLERMKLTAHAAADLAQAKALLTEQRYLLCLTDMKLPDGDGLDLVAHIQRAQPDLPV
AVITAHGTMDTAVRALKNGAFDFVAKPIDLHQLRNLVNAALSLTRQTAGHGPRDRHVLLGESDAIQAIRSKIAKLSRNQA
PIHISGESGTGKELAARLIHSQGPRADKPFVAVNCGAIPPELMESEFFGHKKGSFTGAVSDKTGLFQAAEGGTLFLDEVA
DLPLPLQVKLLRAIQEKAVRPVGEQKETAVDVRILSASHKNLEYLVQQGAFRQDLFYRINVIQLHLPPLRERPGDIPLLA
RHILQRQGESQGQACRLTPQADAALAAYPFPGNVRELENVLERAVALCDGDEIGAEDLGLPQTAPPLASQPESAAPAAPL
PPIAAAGLEALDSYKEELEKQTILHALEQTRWNRTAAAKQLGITFRALRYRLKKLGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=73975 K5607_RS05825 WP_221048486.1 1207822..1209198(-) (pilR) [Methylogaea oryzae strain E10]
ATGCAAAACGAAACCGCCCAAGTCTTGGTGGTGGACGACGAACCGGACATCCGCGAACTCATCGCCCTCACCTTGGAACG
CATGAAACTGACTGCGCACGCCGCGGCCGACCTGGCGCAAGCCAAAGCGTTGCTGACCGAGCAACGGTACCTACTATGCC
TGACCGACATGAAGCTGCCGGACGGCGACGGCCTGGACTTGGTGGCCCACATCCAGCGCGCCCAGCCGGACCTGCCGGTG
GCGGTCATCACCGCCCACGGCACCATGGACACGGCGGTGCGCGCCCTGAAAAACGGCGCGTTCGACTTCGTCGCCAAGCC
CATCGACCTGCACCAGCTGCGCAACCTGGTCAACGCCGCCCTGAGCCTGACGCGGCAAACCGCCGGCCACGGCCCGCGCG
ACCGCCACGTCCTGCTGGGCGAGTCCGACGCCATCCAAGCCATCCGGAGCAAAATCGCCAAGCTGTCGCGCAACCAGGCG
CCCATCCACATCAGCGGCGAATCCGGCACCGGCAAGGAGCTGGCGGCCCGGCTGATCCATAGCCAGGGGCCGCGCGCCGA
TAAGCCTTTCGTCGCCGTCAACTGCGGCGCCATTCCGCCGGAATTGATGGAAAGCGAATTTTTCGGCCACAAAAAAGGCA
GCTTCACCGGCGCGGTGAGCGACAAGACCGGCCTGTTCCAAGCCGCCGAAGGCGGCACCCTGTTCCTCGACGAAGTGGCC
GACCTGCCCTTGCCCCTGCAAGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCCCGGTGGGCGAGCAGAAAGA
AACCGCCGTGGACGTGCGCATCCTCTCCGCCAGCCACAAAAACCTGGAATACCTGGTGCAGCAAGGCGCGTTCCGCCAGG
ACCTGTTCTACCGCATCAACGTCATCCAACTGCACCTGCCGCCGTTGCGGGAACGGCCGGGGGACATTCCCCTCCTGGCC
CGCCACATCCTGCAACGGCAGGGGGAAAGCCAGGGCCAAGCCTGCCGGCTGACGCCCCAGGCCGATGCCGCCCTGGCCGC
CTACCCCTTCCCGGGCAATGTGCGCGAACTGGAAAACGTGCTGGAACGGGCGGTGGCCCTGTGCGACGGCGACGAGATCG
GCGCGGAAGACCTGGGCCTGCCGCAAACTGCGCCGCCGCTGGCATCCCAGCCCGAAAGCGCCGCACCGGCAGCGCCCCTG
CCCCCCATCGCCGCCGCCGGCCTGGAAGCCCTGGACAGCTACAAGGAAGAACTGGAAAAACAAACCATCCTGCACGCCCT
GGAACAAACCCGCTGGAACCGCACTGCCGCCGCCAAGCAACTGGGCATCACCTTCCGCGCCCTGCGTTACCGGCTGAAGA
AACTGGGGCTGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(416-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.927

98.908

0.603
  pilR Acinetobacter baumannii strain A118

50.759

100

0.511

Multiple sequence alignment