Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OFU58_RS17905 Genome accession   NZ_CP107289
Coordinates   3685163..3686575 (+) Length   470 a.a.
NCBI ID   WP_280586326.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3680163..3691575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS17885 (OFU58_17890) thrC 3680418..3681557 (+) 1140 WP_060466387.1 threonine synthase -
  OFU58_RS17890 (OFU58_17895) pbpG 3681665..3682711 (-) 1047 WP_128839933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OFU58_RS17895 (OFU58_17900) gacA 3682924..3683559 (+) 636 WP_002121174.1 response regulator -
  OFU58_RS17900 (OFU58_17905) pilS 3683570..3685138 (+) 1569 WP_280586324.1 PAS domain-containing sensor histidine kinase Regulator
  OFU58_RS17905 (OFU58_17910) pilR 3685163..3686575 (+) 1413 WP_280586326.1 sigma-54 dependent transcriptional regulator Regulator
  OFU58_RS17910 (OFU58_17915) ctpA 3686579..3687763 (-) 1185 WP_002121269.1 S41 family peptidase -
  OFU58_RS17915 (OFU58_17920) gpmI 3687779..3689326 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OFU58_RS17920 (OFU58_17925) lptG 3689453..3690523 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52640.67 Da        Isoelectric Point: 6.3452

>NTDB_id=739360 OFU58_RS17905 WP_280586326.1 3685163..3686575(+) (pilR) [Acinetobacter pittii strain BM4623]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=739360 OFU58_RS17905 WP_280586326.1 3685163..3686575(+) (pilR) [Acinetobacter pittii strain BM4623]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGATGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCACTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAATTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATAAAAAAAATAGCCCGCTCC
CAAGCACCTGTGTTTGTTACAGGTGAGTCTGGTACCGGCAAAGAAGTGGTTGCTAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCGACTGAACTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGTCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCAAGTCACCAAGACTTAGATTTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTAC
GCTATCGATTAAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496