Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   QBW33_RS11830 Genome accession   NZ_CP122368
Coordinates   2614459..2616690 (-) Length   743 a.a.
NCBI ID   WP_338649119.1    Uniprot ID   -
Organism   Streptomyces sp. B21-104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2609459..2621690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBW33_RS11815 (QBW33_11830) - 2609471..2609776 (+) 306 WP_030122508.1 heavy-metal-associated domain-containing protein -
  QBW33_RS11820 (QBW33_11835) - 2610015..2612450 (+) 2436 WP_030122507.1 heavy metal translocating P-type ATPase -
  QBW33_RS11825 (QBW33_11840) - 2612963..2614261 (-) 1299 WP_014156200.1 citrate synthase -
  QBW33_RS11830 (QBW33_11845) recD/recD2/recDB 2614459..2616690 (-) 2232 WP_338649119.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QBW33_RS11835 (QBW33_11850) - 2616837..2617472 (+) 636 WP_015577214.1 SMI1/KNR4 family protein -
  QBW33_RS11840 (QBW33_11855) - 2617716..2618468 (+) 753 WP_338649120.1 methyltransferase domain-containing protein -
  QBW33_RS11845 (QBW33_11860) - 2618520..2619896 (-) 1377 WP_030636426.1 hydrogenase expression protein HypA -
  QBW33_RS11850 (QBW33_11865) - 2620114..2620521 (-) 408 WP_015577217.1 RidA family protein -
  QBW33_RS11855 (QBW33_11870) - 2620648..2621031 (+) 384 WP_030636428.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80038.56 Da        Isoelectric Point: 6.4599

>NTDB_id=739359 QBW33_RS11830 WP_338649119.1 2614459..2616690(-) (recD/recD2/recDB) [Streptomyces sp. B21-104]
MSNSAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWASHPQFGKQFQVDNYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIDCLAELAQDPEGVVREKVPGPEDGQPVTAVYLVPFHRAEISLAAQVQRLLRTPEDRMPGFQDVD
WDKALGWLAGRTGATLAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSVVELARARNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDADEQRLTVLT
DEEEEIAYDFDELDELAHAYAMTIHRSQGGEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLSGGTAEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=739359 QBW33_RS11830 WP_338649119.1 2614459..2616690(-) (recD/recD2/recDB) [Streptomyces sp. B21-104]
ATGTCCAACTCCGCCGTGCTCGAAGGCGTCCTGGAGCGCATCACCTACGCCAACGAGGAGAACGGCTACACCGTGGCCCG
CGTCGACACGGGGCGCGGTGCGGGGGACCTGCTCACCGTCGTCGGCTCGCTCCTCGGTGCCCAGCCCGGCGAGTCCCTGC
GGATGGAGGGGCGTTGGGCCTCGCACCCGCAGTTCGGCAAGCAGTTCCAGGTCGACAACTACACGACGGTCCTCCCGGCG
ACCATCCAGGGCATCCGCCGCTACCTCGGATCGGGCCTGATCAAGGGCATCGGGCCGGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGCCTCGTGGAGGTGCCCGGACTCGGCCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGATTCCTCACCGCCGACCGCATCGCGCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTCCAGGTCGACACCGGGCTCGTCATCGACTGCCTGGCCGAGCTCGCGCAGGACCCCGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGTCAGCCGGTCACCGCCGTGTACCTGGTCCCCTTCCACCGCG
CCGAGATCTCCCTGGCCGCCCAGGTGCAGCGCCTGCTGCGCACCCCGGAGGACCGGATGCCCGGCTTCCAGGACGTCGAC
TGGGACAAGGCGCTCGGCTGGCTCGCGGGGCGTACGGGGGCCACGCTCGCCCCCGAGCAGGAGGCCGCCGTCCGGCTCGC
GCTCACCCGGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTCCGGTCCGTGGTCGAGCTGG
CCCGCGCGCGGAACGCCAAGGTCGTGCTCGCCGCGCCCACCGGGCGGGCGGCGAAGAGGCTCTCGGAGCTGACCGGTGCG
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAACCCGGCGGGGACGCGGCGTACGACCGCGAACGGCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTCAAGGCCGTGGCGCCCGGTG
CCCACCTCCTCCTGGTCGGCGATGTGGACCAGTTGCCCTCGGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTGGCCGAG
GGCGGACCCGTCCCCGCCGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCCGGCGTCGTCACCAACGCCCACCG
CATCAACTCCGGGGTACCGCCGCTGACCCAGGGGCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTGCTCGCCGTCGATGTCGCCGCCCGCCGCATCCCCGCGAAGTTCGGCCTGAATCCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGCGGCCCCGCGGGCGCCGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCCGGACGGCCGGG
CCTGCCCGAGAAGCGGTTCGGAGGCCGCGTCTTCCGGGTAGGCGACAAGGTGACACAGATCAGGAACAACTATGACAAGG
GGGAGAACGGAGTCTTCAACGGCACGGTCGGTGTCGTGACCGCGCTCGACGCGGACGAGCAGAGGCTGACCGTTCTCACG
GACGAGGAGGAGGAGATCGCGTACGACTTCGACGAGCTGGACGAACTGGCCCACGCGTACGCCATGACCATCCACCGCTC
GCAGGGCGGCGAGTATCCGGCGGTCGTCATCCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CCGCCGTGACCAGGGCCAAGAAGCTGGTCGTGCTGGTCGGCTCGCGCAAGGCCATCGGCCAGGCGGTCCGTACCGTTTCC
GCAGGCAGGCGCTGTACGGCACTGGATTTCCGGCTCAGCGGCGGTACGGCGGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(335-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.079

100

0.361