Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OFU58_RS17900 Genome accession   NZ_CP107289
Coordinates   3683570..3685138 (+) Length   522 a.a.
NCBI ID   WP_280586324.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3678570..3690138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS17880 (OFU58_17885) hom 3679062..3680363 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  OFU58_RS17885 (OFU58_17890) thrC 3680418..3681557 (+) 1140 WP_060466387.1 threonine synthase -
  OFU58_RS17890 (OFU58_17895) pbpG 3681665..3682711 (-) 1047 WP_128839933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OFU58_RS17895 (OFU58_17900) gacA 3682924..3683559 (+) 636 WP_002121174.1 response regulator -
  OFU58_RS17900 (OFU58_17905) pilS 3683570..3685138 (+) 1569 WP_280586324.1 PAS domain-containing sensor histidine kinase Regulator
  OFU58_RS17905 (OFU58_17910) pilR 3685163..3686575 (+) 1413 WP_280586326.1 sigma-54 dependent transcriptional regulator Regulator
  OFU58_RS17910 (OFU58_17915) ctpA 3686579..3687763 (-) 1185 WP_002121269.1 S41 family peptidase -
  OFU58_RS17915 (OFU58_17920) gpmI 3687779..3689326 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59065.59 Da        Isoelectric Point: 6.2829

>NTDB_id=739359 OFU58_RS17900 WP_280586324.1 3683570..3685138(+) (pilS) [Acinetobacter pittii strain BM4623]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=739359 OFU58_RS17900 WP_280586324.1 3683570..3685138(+) (pilS) [Acinetobacter pittii strain BM4623]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTGTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCCACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTACTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTGGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAGCAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTCGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAACGACTTTATAAAAACATTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTAATTAA
CCTTGTGAGGAATGCTCTACGACACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.828

100

0.948