NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	OFU58_RS17425	Genome accession	NZ_CP107289
Coordinates	3591790..3592650 (+)	Length	286 a.a.
NCBI ID	WP_280586252.1	Uniprot ID	-
Organism	Acinetobacter pittii strain BM4623
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3586790..3597650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFU58_RS17405 (OFU58_17410)	secG	3587397..3587726 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
OFU58_RS17410 (OFU58_17415)	tpiA	3587739..3588533 (-)	795	WP_068565290.1	triose-phosphate isomerase	-
OFU58_RS17415 (OFU58_17420)	pilB	3588825..3590537 (+)	1713	WP_280586239.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OFU58_RS17420 (OFU58_17425)	pilC	3590564..3591790 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
OFU58_RS17425 (OFU58_17430)	pilD	3591790..3592650 (+)	861	WP_280586252.1	A24 family peptidase	Machinery gene
OFU58_RS17430 (OFU58_17435)	coaE	3592652..3593248 (+)	597	WP_206216940.1	dephospho-CoA kinase	-
OFU58_RS17435 (OFU58_17440)	-	3593245..3594159 (-)	915	WP_069036505.1	DMT family transporter	-
OFU58_RS17440 (OFU58_17445)	rlmB	3594195..3594944 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OFU58_RS17445 (OFU58_17450)	-	3595047..3595373 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
OFU58_RS17450 (OFU58_17455)	-	3595450..3596760 (-)	1311	WP_262468066.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32149.66 Da Isoelectric Point: 7.1786

                                >NTDB_id=739356 OFU58_RS17425 WP_280586252.1 3591790..3592650(+) (pilD) [Acinetobacter pittii strain BM4623]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACHQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=739356 OFU58_RS17425 WP_280586252.1 3591790..3592650(+) (pilD) [Acinetobacter pittii strain BM4623]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCATCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGGTTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTCGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCATTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434

Detailed information NTG0739356