Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OFU58_RS16140 Genome accession   NZ_CP107289
Coordinates   3313062..3313466 (-) Length   134 a.a.
NCBI ID   WP_280585941.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3308062..3318466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS16110 (OFU58_16115) - 3308146..3308415 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OFU58_RS16115 (OFU58_16120) rapZ 3308412..3309263 (-) 852 WP_005066272.1 RNase adapter RapZ -
  OFU58_RS16120 (OFU58_16125) panC 3309287..3310135 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  OFU58_RS16125 (OFU58_16130) panB 3310139..3310948 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OFU58_RS16130 (OFU58_16135) folK 3310994..3311476 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OFU58_RS16135 (OFU58_16140) pcnB 3311473..3312936 (-) 1464 WP_280585939.1 polynucleotide adenylyltransferase PcnB -
  OFU58_RS16140 (OFU58_16145) comEA 3313062..3313466 (-) 405 WP_280585941.1 ComEA family DNA-binding protein Machinery gene
  OFU58_RS16145 (OFU58_16150) mazG 3313435..3314241 (-) 807 WP_069036426.1 nucleoside triphosphate pyrophosphohydrolase -
  OFU58_RS16150 (OFU58_16155) - 3314354..3315127 (+) 774 WP_069036427.1 SDR family oxidoreductase -
  OFU58_RS16155 (OFU58_16160) - 3315674..3316963 (+) 1290 WP_228143207.1 hypothetical protein -
  OFU58_RS16160 (OFU58_16165) - 3316983..3317393 (+) 411 WP_069036428.1 DUF1425 domain-containing protein -
  OFU58_RS16165 (OFU58_16170) lpoB 3317447..3318049 (+) 603 WP_280585945.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15415.62 Da        Isoelectric Point: 10.6248

>NTDB_id=739348 OFU58_RS16140 WP_280585941.1 3313062..3313466(-) (comEA) [Acinetobacter pittii strain BM4623]
MQLSMNLWKNKHNIFIILFWSLISSTLAQAQSFDQNFKEWKAKQQRYDQNLSMQRSAHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=739348 OFU58_RS16140 WP_280585941.1 3313062..3313466(-) (comEA) [Acinetobacter pittii strain BM4623]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGCTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAACAGCAGAGGTATGATCAGAATTTGAGCATGC
AGCGCTCCGCTCATTCTAATAGCCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.153

100

0.687
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396