Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OFO16_RS13895 Genome accession   NZ_CP107282
Coordinates   3005770..3006402 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio natriegens strain PWH3a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000770..3011402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS13875 (OFO16_13875) - 3002560..3003048 (+) 489 WP_014233185.1 TIGR02444 family protein -
  OFO16_RS13880 (OFO16_13880) - 3003217..3004224 (+) 1008 WP_263837595.1 hydrolase -
  OFO16_RS13885 (OFO16_13885) - 3004311..3004523 (+) 213 WP_176292282.1 YheU family protein -
  OFO16_RS13890 (OFO16_13890) - 3004660..3005529 (+) 870 WP_263837596.1 phosphoribulokinase -
  OFO16_RS13895 (OFO16_13895) crp 3005770..3006402 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  OFO16_RS13900 (OFO16_13900) - 3006503..3007294 (-) 792 WP_263837597.1 DUF1338 domain-containing protein -
  OFO16_RS13905 (OFO16_13905) astD 3007517..3008974 (-) 1458 WP_014233190.1 succinylglutamate-semialdehyde dehydrogenase -
  OFO16_RS13910 (OFO16_13910) astA 3009003..3010022 (-) 1020 WP_263837598.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=739287 OFO16_RS13895 WP_005381432.1 3005770..3006402(+) (crp) [Vibrio natriegens strain PWH3a]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=739287 OFO16_RS13895 WP_005381432.1 3005770..3006402(+) (crp) [Vibrio natriegens strain PWH3a]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACATTAGAGTGGTTTCTTTCACACTGTCACATTCATAAGTACCCTTCAAA
GAGCACGCTGATTCACGCAGGTGAAAAAGCTGAAACCTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGAGCTAAATCTCCTTGCGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGCCTTCAAGTAACCAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAATCTAATCTCTGCGCACGGTAAAACTATCGTAGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471