Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOY54_RS00830 Genome accession   NZ_AP019774
Coordinates   151050..151859 (-) Length   269 a.a.
NCBI ID   WP_064430127.1    Uniprot ID   -
Organism   Helicobacter suis strain SNTW101c     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 146050..156859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS00805 (SNTW_01670) - 146532..147812 (+) 1281 WP_064430129.1 ArsS family sensor histidine kinase -
  FOY54_RS00810 (SNTW_01680) - 147809..148990 (+) 1182 WP_050782203.1 amidophosphoribosyltransferase -
  FOY54_RS00815 (SNTW_01690) hemB 148983..149954 (+) 972 WP_064430128.1 porphobilinogen synthase -
  FOY54_RS00820 (SNTW_01700) - 149954..150676 (+) 723 WP_006563894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FOY54_RS00825 (SNTW_01710) dprB 150658..151053 (-) 396 WP_006563893.1 Holliday junction resolvase RuvX Machinery gene
  FOY54_RS00830 (SNTW_01720) dprA 151050..151859 (-) 810 WP_064430127.1 DNA-processing protein DprA Machinery gene
  FOY54_RS00835 (SNTW_01730) minE 151847..152104 (-) 258 WP_034376430.1 cell division topological specificity factor MinE -
  FOY54_RS00840 (SNTW_01740) minD 152101..152901 (-) 801 WP_006563890.1 septum site-determining protein MinD -
  FOY54_RS00845 (SNTW_01750) ilvC 152910..153890 (-) 981 WP_006565235.1 ketol-acid reductoisomerase -
  FOY54_RS00850 (SNTW_01760) - 153987..156611 (+) 2625 WP_143433388.1 phosphoenolpyruvate carboxylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29847.64 Da        Isoelectric Point: 8.8408

>NTDB_id=73917 FOY54_RS00830 WP_064430127.1 151050..151859(-) (dprA) [Helicobacter suis strain SNTW101c]
MPVLSHFNYTLLNALPTVLGHLKNPPQNLYYVGRLELFNAPFKIALVGTRKPSVYTQQLTAKLAKGIMQMGGVVVSGGAF
GVDIIAQKNALPHTIMISPCSLDLIYPPSNHATITRIAKEGLLVSEYQENFQPYRFSFLERNRLVVALSDLVIIPEESHN
SGSMASAHLALAQKKPLFVLPQRLYESEGTLSLLAQNKAQAIYDIDAFLDQLAQKFNTKPPKEKAQNAFLKFCQSAPSFE
EAYAQFGDFLLEQELLGVVKRENGRVVLL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=73917 FOY54_RS00830 WP_064430127.1 151050..151859(-) (dprA) [Helicobacter suis strain SNTW101c]
TTGCCCGTATTAAGCCATTTTAACTACACCTTACTTAACGCGCTACCCACAGTCTTAGGGCATCTTAAAAATCCACCGCA
AAATTTATACTATGTGGGTCGCTTAGAGCTTTTCAACGCTCCTTTTAAAATCGCGCTAGTAGGTACGCGTAAACCCAGTG
TCTACACCCAGCAACTCACAGCTAAATTAGCAAAGGGCATTATGCAAATGGGGGGAGTGGTGGTCAGTGGTGGGGCTTTT
GGGGTAGATATTATTGCCCAAAAAAATGCATTACCCCATACAATTATGATCTCTCCATGTAGTTTAGATTTAATTTATCC
TCCAAGTAATCATGCAACCATTACGCGCATTGCTAAAGAAGGCTTACTTGTGAGTGAATACCAAGAGAATTTTCAACCTT
ATCGTTTTTCATTTTTAGAACGAAACCGTTTAGTGGTGGCTTTAAGCGATTTGGTGATTATTCCAGAAGAAAGCCATAAT
AGCGGCTCTATGGCAAGCGCTCATTTAGCTCTAGCCCAAAAAAAGCCTCTCTTTGTGTTACCCCAGCGGCTTTATGAGAG
TGAGGGAACTCTTTCTCTCTTAGCGCAAAATAAAGCCCAAGCGATTTATGATATAGATGCCTTTTTAGATCAATTAGCCC
AAAAATTTAACACAAAGCCCCCTAAAGAAAAAGCACAAAATGCTTTTTTGAAATTCTGCCAGAGTGCGCCTAGTTTTGAG
GAGGCGTACGCTCAGTTTGGGGATTTTCTCTTAGAACAAGAACTTTTAGGGGTGGTTAAACGAGAAAATGGGCGGGTTGT
GTTGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(15-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

53.788

98.141

0.528
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.489

86.617

0.368

Multiple sequence alignment