Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FOY54_RS00825 Genome accession   NZ_AP019774
Coordinates   150658..151053 (-) Length   131 a.a.
NCBI ID   WP_006563893.1    Uniprot ID   A0A6J4CVV1
Organism   Helicobacter suis strain SNTW101c     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 145658..156053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS00800 (SNTW_01660) - 145850..146530 (+) 681 WP_064430133.1 response regulator transcription factor -
  FOY54_RS00805 (SNTW_01670) - 146532..147812 (+) 1281 WP_064430129.1 ArsS family sensor histidine kinase -
  FOY54_RS00810 (SNTW_01680) - 147809..148990 (+) 1182 WP_050782203.1 amidophosphoribosyltransferase -
  FOY54_RS00815 (SNTW_01690) hemB 148983..149954 (+) 972 WP_064430128.1 porphobilinogen synthase -
  FOY54_RS00820 (SNTW_01700) - 149954..150676 (+) 723 WP_006563894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FOY54_RS00825 (SNTW_01710) dprB 150658..151053 (-) 396 WP_006563893.1 Holliday junction resolvase RuvX Machinery gene
  FOY54_RS00830 (SNTW_01720) dprA 151050..151859 (-) 810 WP_064430127.1 DNA-processing protein DprA Machinery gene
  FOY54_RS00835 (SNTW_01730) minE 151847..152104 (-) 258 WP_034376430.1 cell division topological specificity factor MinE -
  FOY54_RS00840 (SNTW_01740) minD 152101..152901 (-) 801 WP_006563890.1 septum site-determining protein MinD -
  FOY54_RS00845 (SNTW_01750) ilvC 152910..153890 (-) 981 WP_006565235.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14821.61 Da        Isoelectric Point: 10.1350

>NTDB_id=73916 FOY54_RS00825 WP_006563893.1 150658..151053(-) (dprB) [Helicobacter suis strain SNTW101c]
MIIACDIGLKRIGLAIYAQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLPHACYTTRQRVLHFINLLNFAPVI
YVEEDNSSVEALTNLWHLSSKKRQKASKDGALDSLAACEILRRYLAQEMLV

Nucleotide


Download         Length: 396 bp        

>NTDB_id=73916 FOY54_RS00825 WP_006563893.1 150658..151053(-) (dprB) [Helicobacter suis strain SNTW101c]
ATGATCATCGCTTGTGATATTGGGCTTAAACGAATCGGTCTTGCGATTTATGCACAAAAAATTATTCTGCCCCTTAATTC
CATTAAACGGATTAATCGCAAACAAGCTAGTTTAGAATTACTCCATTTGCTAGAAACTAAAAAGGCCACAAAACTCATCG
TCGGATTGCCCCATGCCTGCTACACCACACGCCAACGCGTTTTACATTTTATTAATCTACTTAACTTTGCGCCTGTGATT
TATGTTGAGGAAGATAATAGCAGTGTAGAGGCGCTTACTAATCTTTGGCATTTATCTAGCAAAAAACGCCAAAAAGCCAG
CAAAGACGGCGCACTAGATAGTTTGGCTGCCTGTGAGATTTTAAGGCGCTATCTAGCTCAAGAAATGTTGGTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CVV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

51.587

96.183

0.496

Multiple sequence alignment