Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   OHM01_RS08290 Genome accession   NZ_CP107274
Coordinates   1577820..1578269 (-) Length   149 a.a.
NCBI ID   WP_061729980.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572820..1583269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS08260 (OHM01_08260) - 1573867..1574289 (-) 423 WP_003691751.1 very short patch repair endonuclease -
  OHM01_RS08265 (OHM01_08265) - 1574295..1574891 (-) 597 WP_012503916.1 TIGR02391 family protein -
  OHM01_RS08270 (OHM01_08270) - 1575081..1575938 (-) 858 WP_012503917.1 ATP-binding protein -
  OHM01_RS08275 (OHM01_08275) - 1575952..1576281 (-) 330 WP_002234365.1 DNA cytosine methyltransferase -
  OHM01_RS08280 (OHM01_08280) - 1576320..1576928 (-) 609 WP_080229275.1 DNA cytosine methyltransferase -
  OHM01_RS08285 (OHM01_08285) - 1577297..1577443 (+) 147 WP_003691757.1 hypothetical protein -
  OHM01_RS08290 (OHM01_08290) comP 1577820..1578269 (-) 450 WP_061729980.1 type IV pilin protein Machinery gene
  OHM01_RS08295 (OHM01_08295) comE 1578357..1578752 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OHM01_RS08300 (OHM01_08300) - 1578857..1578973 (-) 117 Protein_1603 competence protein ComE -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16824.77 Da        Isoelectric Point: 9.7951

>NTDB_id=739133 OHM01_RS08290 WP_061729980.1 1577820..1578269(-) (comP) [Neisseria gonorrhoeae strain 1145734]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLSIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=739133 OHM01_RS08290 WP_061729980.1 1577820..1578269(-) (comP) [Neisseria gonorrhoeae strain 1145734]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGTCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483